Strain Fitness in Marinobacter adhaerens HP15 around HP15_1489

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1488 and HP15_1489 are separated by 68 nucleotidesHP15_1489 and HP15_1490 are separated by 63 nucleotides HP15_1488: HP15_1488 - cysteine desulfurase IscS, at 1,562,931 to 1,564,079 _1488 HP15_1489: HP15_1489 - nucleoside diphosphate kinase, at 1,564,148 to 1,564,576 _1489 HP15_1490: HP15_1490 - conserved hypothetical protein, at 1,564,640 to 1,565,752 _1490 Position (kb) 1564 1565Strain fitness (log2 ratio) -1 0 1 2at 1564.584 kb on + strandat 1565.031 kb on + strand, within HP15_1490at 1565.084 kb on + strand, within HP15_1490at 1565.523 kb on + strand, within HP15_1490

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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1,564,584 + +2.0
1,565,031 + HP15_1490 0.35 +0.4
1,565,084 + HP15_1490 0.40 +1.2
1,565,523 + HP15_1490 0.79 -1.1

Or see this region's nucleotide sequence