Strain Fitness in Marinobacter adhaerens HP15 around HP15_1481

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1479 and HP15_1480 are separated by 29 nucleotidesHP15_1480 and HP15_1481 are separated by 95 nucleotidesHP15_1481 and HP15_1482 overlap by 8 nucleotides HP15_1479: HP15_1479 - queuine tRNA-ribosyltransferase, at 1,555,205 to 1,556,326 _1479 HP15_1480: HP15_1480 - preprotein translocase, YajC subunit, at 1,556,356 to 1,556,718 _1480 HP15_1481: HP15_1481 - preprotein translocase subunit SecD, at 1,556,814 to 1,558,688 _1481 HP15_1482: HP15_1482 - preprotein translocase subunit SecF, at 1,558,681 to 1,559,634 _1482 Position (kb) 1556 1557 1558 1559Strain fitness (log2 ratio) -2 -1 0 1at 1555.931 kb on + strand, within HP15_1479at 1556.000 kb on - strand, within HP15_1479at 1556.071 kb on - strand, within HP15_1479at 1556.278 kb on + strandat 1556.278 kb on + strandat 1556.556 kb on + strand, within HP15_1480at 1559.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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1,555,931 + HP15_1479 0.65 -0.6
1,556,000 - HP15_1479 0.71 +0.2
1,556,071 - HP15_1479 0.77 -2.0
1,556,278 + -0.3
1,556,278 + -0.2
1,556,556 + HP15_1480 0.55 -0.2
1,559,626 - -1.2

Or see this region's nucleotide sequence