Strain Fitness in Marinobacter adhaerens HP15 around HP15_1464

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1462 and HP15_1463 are separated by 14 nucleotidesHP15_1463 and HP15_1464 are separated by 30 nucleotidesHP15_1464 and HP15_1465 are separated by 1 nucleotidesHP15_1465 and HP15_1466 are separated by 155 nucleotides HP15_1462: HP15_1462 - ABC-type multidrug transport system, permease component, at 1,538,255 to 1,539,028 _1462 HP15_1463: HP15_1463 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 1,539,043 to 1,539,861 _1463 HP15_1464: HP15_1464 - adenylate/guanylate cyclase, at 1,539,892 to 1,541,331 _1464 HP15_1465: HP15_1465 - conserved hypothetical protein, membrane, at 1,541,333 to 1,541,644 _1465 HP15_1466: HP15_1466 - nitroreductase family protein, at 1,541,800 to 1,542,351 _1466 Position (kb) 1539 1540 1541 1542Strain fitness (log2 ratio) -1 0 1 2at 1539.046 kb on - strandat 1539.098 kb on + strandat 1539.338 kb on - strand, within HP15_1463at 1539.376 kb on - strand, within HP15_1463at 1539.400 kb on + strand, within HP15_1463at 1539.408 kb on - strand, within HP15_1463at 1539.408 kb on - strand, within HP15_1463at 1539.557 kb on + strand, within HP15_1463at 1539.615 kb on + strand, within HP15_1463at 1539.622 kb on + strand, within HP15_1463at 1539.622 kb on + strand, within HP15_1463at 1539.763 kb on - strand, within HP15_1463at 1540.146 kb on - strand, within HP15_1464at 1540.303 kb on - strand, within HP15_1464at 1540.327 kb on - strand, within HP15_1464at 1540.418 kb on + strand, within HP15_1464at 1540.421 kb on - strand, within HP15_1464at 1540.421 kb on - strand, within HP15_1464at 1540.597 kb on - strand, within HP15_1464at 1540.754 kb on - strand, within HP15_1464at 1540.850 kb on - strand, within HP15_1464at 1540.959 kb on - strand, within HP15_1464at 1540.973 kb on - strand, within HP15_1464at 1541.106 kb on + strand, within HP15_1464at 1541.124 kb on - strand, within HP15_1464at 1541.124 kb on - strand, within HP15_1464at 1541.147 kb on - strand, within HP15_1464at 1541.209 kb on - strandat 1541.382 kb on + strand, within HP15_1465at 1541.388 kb on + strand, within HP15_1465at 1541.388 kb on + strand, within HP15_1465at 1541.396 kb on - strand, within HP15_1465at 1541.570 kb on + strand, within HP15_1465at 1541.712 kb on + strandat 1541.720 kb on + strandat 1541.842 kb on - strandat 1541.842 kb on - strandat 1541.885 kb on - strand, within HP15_1466at 1541.915 kb on + strand, within HP15_1466at 1541.925 kb on + strand, within HP15_1466at 1541.931 kb on - strand, within HP15_1466at 1542.066 kb on - strand, within HP15_1466at 1542.092 kb on - strand, within HP15_1466at 1542.094 kb on + strand, within HP15_1466at 1542.161 kb on + strand, within HP15_1466at 1542.161 kb on + strand, within HP15_1466at 1542.208 kb on + strand, within HP15_1466at 1542.208 kb on + strand, within HP15_1466at 1542.240 kb on - strand, within HP15_1466at 1542.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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1,539,046 - +1.4
1,539,098 + -0.8
1,539,338 - HP15_1463 0.36 +0.3
1,539,376 - HP15_1463 0.41 -0.1
1,539,400 + HP15_1463 0.44 -0.0
1,539,408 - HP15_1463 0.45 +0.1
1,539,408 - HP15_1463 0.45 +0.9
1,539,557 + HP15_1463 0.63 -0.4
1,539,615 + HP15_1463 0.70 +1.3
1,539,622 + HP15_1463 0.71 -0.4
1,539,622 + HP15_1463 0.71 +1.2
1,539,763 - HP15_1463 0.88 +1.2
1,540,146 - HP15_1464 0.18 -0.9
1,540,303 - HP15_1464 0.29 -0.4
1,540,327 - HP15_1464 0.30 -1.2
1,540,418 + HP15_1464 0.37 +1.1
1,540,421 - HP15_1464 0.37 -0.8
1,540,421 - HP15_1464 0.37 -0.6
1,540,597 - HP15_1464 0.49 +1.4
1,540,754 - HP15_1464 0.60 -0.8
1,540,850 - HP15_1464 0.67 -0.7
1,540,959 - HP15_1464 0.74 -0.2
1,540,973 - HP15_1464 0.75 +0.1
1,541,106 + HP15_1464 0.84 -0.2
1,541,124 - HP15_1464 0.86 -0.3
1,541,124 - HP15_1464 0.86 -0.4
1,541,147 - HP15_1464 0.87 -0.9
1,541,209 - +0.3
1,541,382 + HP15_1465 0.16 -0.1
1,541,388 + HP15_1465 0.18 +0.0
1,541,388 + HP15_1465 0.18 +0.6
1,541,396 - HP15_1465 0.20 +0.2
1,541,570 + HP15_1465 0.76 -0.6
1,541,712 + -1.1
1,541,720 + -1.3
1,541,842 - +0.0
1,541,842 - -0.1
1,541,885 - HP15_1466 0.15 -0.6
1,541,915 + HP15_1466 0.21 -1.2
1,541,925 + HP15_1466 0.23 -0.4
1,541,931 - HP15_1466 0.24 +1.7
1,542,066 - HP15_1466 0.48 +2.6
1,542,092 - HP15_1466 0.53 +0.5
1,542,094 + HP15_1466 0.53 +0.1
1,542,161 + HP15_1466 0.65 -0.3
1,542,161 + HP15_1466 0.65 -0.1
1,542,208 + HP15_1466 0.74 -0.7
1,542,208 + HP15_1466 0.74 +1.2
1,542,240 - HP15_1466 0.80 -0.3
1,542,317 - +2.1

Or see this region's nucleotide sequence