Strain Fitness in Marinobacter adhaerens HP15 around HP15_1317

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1316 and HP15_1317 are separated by 10 nucleotidesHP15_1317 and HP15_1318 are separated by 29 nucleotidesHP15_1318 and HP15_1319 are separated by 141 nucleotides HP15_1316: HP15_1316 - permease YjgP/YjgQ family protein, at 1,378,110 to 1,379,219 _1316 HP15_1317: HP15_1317 - permease YjgP/YjgQ family protein, at 1,379,230 to 1,380,267 _1317 HP15_1318: HP15_1318 - RDD domain containing protein, at 1,380,297 to 1,380,836 _1318 HP15_1319: HP15_1319 - alanyl-tRNA synthetase, class IIc, at 1,380,978 to 1,383,608 _1319 Position (kb) 1379 1380 1381Strain fitness (log2 ratio) -3 -2 -1 0 1at 1380.367 kb on + strand, within HP15_1318at 1380.406 kb on + strand, within HP15_1318at 1380.494 kb on - strand, within HP15_1318at 1380.607 kb on - strand, within HP15_1318at 1380.607 kb on - strand, within HP15_1318at 1380.686 kb on - strand, within HP15_1318at 1380.737 kb on + strand, within HP15_1318at 1380.801 kb on + strandat 1380.809 kb on - strandat 1380.851 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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1,380,367 + HP15_1318 0.13 -2.2
1,380,406 + HP15_1318 0.20 -1.1
1,380,494 - HP15_1318 0.36 -3.4
1,380,607 - HP15_1318 0.57 -0.1
1,380,607 - HP15_1318 0.57 -1.0
1,380,686 - HP15_1318 0.72 -3.6
1,380,737 + HP15_1318 0.81 -0.2
1,380,801 + -1.6
1,380,809 - -1.3
1,380,851 + -2.3

Or see this region's nucleotide sequence