Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1306 and HP15_1307 are separated by 69 nucleotides HP15_1307 and HP15_1308 are separated by 0 nucleotides HP15_1308 and HP15_1309 are separated by 50 nucleotides
HP15_1306: HP15_1306 - protein containing DUF1631, at 1,365,392 to 1,367,689
_1306
HP15_1307: HP15_1307 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 1,367,759 to 1,368,385
_1307
HP15_1308: HP15_1308 - signaling modulator of AmpD, AmpE, at 1,368,386 to 1,368,901
_1308
HP15_1309: HP15_1309 - signaling modulator of AmpD, AmpE, at 1,368,952 to 1,369,272
_1309
Position (kb)
1367
1368
1369 Strain fitness (log2 ratio)
-1
0
1
2 at 1366.958 kb on - strand, within HP15_1306 at 1367.003 kb on - strand, within HP15_1306 at 1367.025 kb on - strand, within HP15_1306 at 1367.025 kb on - strand, within HP15_1306 at 1367.063 kb on + strand, within HP15_1306 at 1367.073 kb on + strand, within HP15_1306 at 1367.078 kb on + strand, within HP15_1306 at 1367.212 kb on - strand, within HP15_1306 at 1367.233 kb on - strand, within HP15_1306 at 1367.291 kb on - strand, within HP15_1306 at 1367.334 kb on + strand, within HP15_1306 at 1367.436 kb on + strand, within HP15_1306 at 1367.632 kb on - strand at 1367.702 kb on - strand at 1368.347 kb on + strand at 1368.438 kb on + strand, within HP15_1308 at 1368.463 kb on + strand, within HP15_1308 at 1368.471 kb on - strand, within HP15_1308 at 1368.504 kb on - strand, within HP15_1308 at 1368.692 kb on - strand, within HP15_1308 at 1368.719 kb on + strand, within HP15_1308 at 1368.719 kb on + strand, within HP15_1308 at 1368.750 kb on - strand, within HP15_1308 at 1368.793 kb on + strand, within HP15_1308 at 1368.799 kb on + strand, within HP15_1308 at 1368.799 kb on + strand, within HP15_1308 at 1368.799 kb on + strand, within HP15_1308 at 1368.807 kb on - strand, within HP15_1308 at 1368.851 kb on + strand at 1368.888 kb on - strand at 1369.156 kb on + strand, within HP15_1309
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 1,366,958 - HP15_1306 0.68 +0.2 1,367,003 - HP15_1306 0.70 +0.1 1,367,025 - HP15_1306 0.71 -0.2 1,367,025 - HP15_1306 0.71 +1.2 1,367,063 + HP15_1306 0.73 +1.3 1,367,073 + HP15_1306 0.73 +0.8 1,367,078 + HP15_1306 0.73 +0.1 1,367,212 - HP15_1306 0.79 +1.4 1,367,233 - HP15_1306 0.80 -0.7 1,367,291 - HP15_1306 0.83 +0.5 1,367,334 + HP15_1306 0.85 +0.0 1,367,436 + HP15_1306 0.89 +2.6 1,367,632 - +0.6 1,367,702 - -0.5 1,368,347 + -0.0 1,368,438 + HP15_1308 0.10 +0.8 1,368,463 + HP15_1308 0.15 +1.2 1,368,471 - HP15_1308 0.16 -0.7 1,368,504 - HP15_1308 0.23 -0.2 1,368,692 - HP15_1308 0.59 -0.6 1,368,719 + HP15_1308 0.65 +0.9 1,368,719 + HP15_1308 0.65 +0.2 1,368,750 - HP15_1308 0.71 -0.7 1,368,793 + HP15_1308 0.79 -0.7 1,368,799 + HP15_1308 0.80 +0.3 1,368,799 + HP15_1308 0.80 -1.0 1,368,799 + HP15_1308 0.80 -0.2 1,368,807 - HP15_1308 0.82 -0.2 1,368,851 + -0.2 1,368,888 - -1.0 1,369,156 + HP15_1309 0.64 -0.1
Or see this region's nucleotide sequence