Strain Fitness in Marinobacter adhaerens HP15 around HP15_1005

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1004 and HP15_1005 are separated by 207 nucleotidesHP15_1005 and HP15_1006 are separated by 29 nucleotidesHP15_1006 and HP15_1007 are separated by 104 nucleotides HP15_1004: HP15_1004 - 3-methylcrotonyl CoA carboxylase, beta subunit, at 1,014,240 to 1,015,847 _1004 HP15_1005: HP15_1005 - acyl-CoA dehydrogenase domain protein, at 1,016,055 to 1,017,224 _1005 HP15_1006: HP15_1006 - transcriptional regulator, MerR family, at 1,017,254 to 1,017,697 _1006 HP15_1007: HP15_1007 - 3-hydroxyacyl-CoA dehydrogenase type II, at 1,017,802 to 1,018,563 _1007 Position (kb) 1016 1017 1018Strain fitness (log2 ratio) -2 -1 0 1at 1016.364 kb on - strand, within HP15_1005at 1017.597 kb on + strand, within HP15_1006at 1017.605 kb on - strand, within HP15_1006at 1017.616 kb on - strand, within HP15_1006at 1017.847 kb on + strandat 1017.856 kb on - strandat 1017.919 kb on + strand, within HP15_1007at 1018.002 kb on + strand, within HP15_1007at 1018.052 kb on + strand, within HP15_1007at 1018.177 kb on + strand, within HP15_1007

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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1,016,364 - HP15_1005 0.26 +1.5
1,017,597 + HP15_1006 0.77 -0.8
1,017,605 - HP15_1006 0.79 -1.1
1,017,616 - HP15_1006 0.82 -2.6
1,017,847 + +0.4
1,017,856 - -0.6
1,017,919 + HP15_1007 0.15 +1.0
1,018,002 + HP15_1007 0.26 +0.7
1,018,052 + HP15_1007 0.33 +1.2
1,018,177 + HP15_1007 0.49 -0.4

Or see this region's nucleotide sequence