Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_948 and HP15_949 are separated by 120 nucleotides HP15_949 and HP15_950 overlap by 4 nucleotides HP15_950 and HP15_951 are separated by 107 nucleotides
HP15_948: HP15_948 - conserved hypothetical protein, secreted, at 964,950 to 965,378
_948
HP15_949: HP15_949 - conserved hypothetical protein, at 965,499 to 966,227
_949
HP15_950: HP15_950 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 966,224 to 966,832
_950
HP15_951: HP15_951 - transcriptional regulator, AraC family protein, at 966,940 to 967,950
_951
Position (kb) 966
967 Strain fitness (log2 ratio) -2
-1
0
1
2 at 965.282 kb on + strand, within HP15_948 at 965.282 kb on - strand, within HP15_948 at 965.314 kb on - strand, within HP15_948 at 965.409 kb on - strand at 965.518 kb on + strand at 965.526 kb on - strand at 965.545 kb on + strand at 965.553 kb on - strand at 965.589 kb on + strand, within HP15_949 at 965.605 kb on + strand, within HP15_949 at 965.613 kb on - strand, within HP15_949 at 965.615 kb on + strand, within HP15_949 at 965.623 kb on - strand, within HP15_949 at 965.623 kb on - strand, within HP15_949 at 965.857 kb on + strand, within HP15_949 at 965.865 kb on - strand, within HP15_949 at 965.966 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.017 kb on - strand, within HP15_949 at 966.051 kb on - strand, within HP15_949 at 966.056 kb on - strand, within HP15_949 at 966.239 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.258 kb on - strand at 966.258 kb on - strand at 966.427 kb on + strand, within HP15_950 at 966.580 kb on + strand, within HP15_950 at 966.643 kb on - strand, within HP15_950 at 966.754 kb on + strand, within HP15_950 at 966.772 kb on - strand at 966.772 kb on - strand at 966.819 kb on + strand at 966.917 kb on - strand at 966.917 kb on - strand at 966.917 kb on - strand at 966.917 kb on - strand at 966.942 kb on + strand at 967.106 kb on + strand, within HP15_951 at 967.134 kb on - strand, within HP15_951 at 967.135 kb on - strand, within HP15_951 at 967.188 kb on - strand, within HP15_951 at 967.212 kb on - strand, within HP15_951 at 967.217 kb on - strand, within HP15_951 at 967.294 kb on + strand, within HP15_951 at 967.339 kb on - strand, within HP15_951 at 967.348 kb on + strand, within HP15_951 at 967.351 kb on - strand, within HP15_951 at 967.397 kb on - strand, within HP15_951 at 967.403 kb on + strand, within HP15_951 at 967.456 kb on + strand, within HP15_951 at 967.515 kb on - strand, within HP15_951 at 967.519 kb on + strand, within HP15_951 at 967.519 kb on + strand, within HP15_951 at 967.520 kb on - strand, within HP15_951 at 967.520 kb on - strand, within HP15_951 at 967.527 kb on - strand, within HP15_951 at 967.545 kb on + strand, within HP15_951 at 967.669 kb on - strand, within HP15_951 at 967.685 kb on - strand, within HP15_951 at 967.782 kb on - strand, within HP15_951 at 967.819 kb on + strand, within HP15_951
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 965,282 + HP15_948 0.77 -0.7 965,282 - HP15_948 0.77 -0.2 965,314 - HP15_948 0.85 +1.0 965,409 - -2.6 965,518 + -0.5 965,526 - +2.0 965,545 + +0.6 965,553 - -0.2 965,589 + HP15_949 0.12 +0.2 965,605 + HP15_949 0.15 +0.5 965,613 - HP15_949 0.16 -0.1 965,615 + HP15_949 0.16 -0.5 965,623 - HP15_949 0.17 -0.4 965,623 - HP15_949 0.17 -0.2 965,857 + HP15_949 0.49 -0.2 965,865 - HP15_949 0.50 -0.1 965,966 + HP15_949 0.64 +1.6 966,009 + HP15_949 0.70 +0.6 966,009 + HP15_949 0.70 +0.1 966,009 + HP15_949 0.70 -0.3 966,009 + HP15_949 0.70 +1.9 966,009 + HP15_949 0.70 -0.5 966,009 + HP15_949 0.70 +0.4 966,009 + HP15_949 0.70 -0.4 966,009 + HP15_949 0.70 -0.0 966,009 + HP15_949 0.70 +0.2 966,009 + HP15_949 0.70 +0.2 966,017 - HP15_949 0.71 -0.0 966,051 - HP15_949 0.76 -0.5 966,056 - HP15_949 0.76 -1.4 966,239 + +0.6 966,250 + -0.5 966,250 + -0.3 966,250 + +0.5 966,250 + -0.8 966,250 + -0.4 966,258 - -1.2 966,258 - -0.2 966,427 + HP15_950 0.33 +0.3 966,580 + HP15_950 0.58 +0.5 966,643 - HP15_950 0.69 -0.4 966,754 + HP15_950 0.87 -0.7 966,772 - -0.2 966,772 - -0.1 966,819 + -0.5 966,917 - -0.0 966,917 - -0.3 966,917 - +0.2 966,917 - +1.0 966,942 + -0.2 967,106 + HP15_951 0.16 -1.0 967,134 - HP15_951 0.19 -1.0 967,135 - HP15_951 0.19 +0.8 967,188 - HP15_951 0.25 -0.6 967,212 - HP15_951 0.27 -0.4 967,217 - HP15_951 0.27 -0.3 967,294 + HP15_951 0.35 -0.1 967,339 - HP15_951 0.39 +0.2 967,348 + HP15_951 0.40 +0.3 967,351 - HP15_951 0.41 +0.6 967,397 - HP15_951 0.45 +0.0 967,403 + HP15_951 0.46 +0.6 967,456 + HP15_951 0.51 -0.2 967,515 - HP15_951 0.57 +0.3 967,519 + HP15_951 0.57 -0.1 967,519 + HP15_951 0.57 -0.8 967,520 - HP15_951 0.57 +0.4 967,520 - HP15_951 0.57 +0.5 967,527 - HP15_951 0.58 -0.2 967,545 + HP15_951 0.60 +0.5 967,669 - HP15_951 0.72 -0.3 967,685 - HP15_951 0.74 +0.7 967,782 - HP15_951 0.83 -0.9 967,819 + HP15_951 0.87 -0.0
Or see this region's nucleotide sequence