Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_753 and HP15_754 are separated by 195 nucleotides HP15_754 and HP15_755 are separated by 157 nucleotides HP15_755 and HP15_756 are separated by 85 nucleotides
HP15_753: HP15_753 - protein containing DUF1631, at 761,957 to 764,188
_753
HP15_754: HP15_754 - membrane protein containing DUF1282, at 764,384 to 764,986
_754
HP15_755: HP15_755 - Mg2+ and Co2+ transporter CorB, at 765,144 to 766,430
_755
HP15_756: HP15_756 - cytochrome c assembly protein, at 766,516 to 767,340
_756
Position (kb) 765
766
767 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 764.332 kb on + strand at 764.332 kb on + strand at 764.346 kb on + strand at 764.459 kb on - strand, within HP15_754 at 764.543 kb on - strand, within HP15_754 at 764.857 kb on + strand, within HP15_754 at 764.900 kb on - strand, within HP15_754 at 764.908 kb on - strand, within HP15_754 at 764.962 kb on + strand at 764.970 kb on - strand at 765.024 kb on + strand at 765.051 kb on + strand at 765.238 kb on - strand at 765.405 kb on - strand, within HP15_755 at 765.567 kb on + strand, within HP15_755 at 765.661 kb on - strand, within HP15_755 at 765.682 kb on + strand, within HP15_755 at 765.756 kb on + strand, within HP15_755 at 766.028 kb on - strand, within HP15_755 at 766.162 kb on + strand, within HP15_755 at 766.162 kb on + strand, within HP15_755 at 766.240 kb on - strand, within HP15_755 at 766.240 kb on - strand, within HP15_755 at 766.281 kb on + strand, within HP15_755 at 766.333 kb on + strand at 766.345 kb on - strand at 766.384 kb on + strand at 766.404 kb on - strand at 766.573 kb on + strand at 766.581 kb on - strand at 766.645 kb on + strand, within HP15_756 at 766.687 kb on - strand, within HP15_756 at 766.775 kb on + strand, within HP15_756 at 766.782 kb on - strand, within HP15_756 at 766.887 kb on - strand, within HP15_756 at 766.923 kb on - strand, within HP15_756 at 766.938 kb on + strand, within HP15_756 at 766.994 kb on - strand, within HP15_756 at 766.994 kb on - strand, within HP15_756 at 767.160 kb on - strand, within HP15_756 at 767.211 kb on + strand, within HP15_756 at 767.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 764,332 + -0.5 764,332 + -2.1 764,346 + -0.2 764,459 - HP15_754 0.12 -0.1 764,543 - HP15_754 0.26 -0.1 764,857 + HP15_754 0.78 -0.1 764,900 - HP15_754 0.86 +0.3 764,908 - HP15_754 0.87 -0.4 764,962 + -0.1 764,970 - -0.2 765,024 + +1.7 765,051 + +1.1 765,238 - -0.2 765,405 - HP15_755 0.20 -1.7 765,567 + HP15_755 0.33 -0.5 765,661 - HP15_755 0.40 -0.1 765,682 + HP15_755 0.42 +0.5 765,756 + HP15_755 0.48 -0.6 766,028 - HP15_755 0.69 -0.8 766,162 + HP15_755 0.79 -1.1 766,162 + HP15_755 0.79 -3.3 766,240 - HP15_755 0.85 +1.5 766,240 - HP15_755 0.85 -0.7 766,281 + HP15_755 0.88 +0.2 766,333 + -1.1 766,345 - +0.2 766,384 + -1.3 766,404 - -0.8 766,573 + -3.0 766,581 - -2.6 766,645 + HP15_756 0.16 -0.1 766,687 - HP15_756 0.21 -4.0 766,775 + HP15_756 0.31 -2.0 766,782 - HP15_756 0.32 -4.6 766,887 - HP15_756 0.45 -3.0 766,923 - HP15_756 0.49 -2.3 766,938 + HP15_756 0.51 -5.1 766,994 - HP15_756 0.58 -2.8 766,994 - HP15_756 0.58 -3.2 767,160 - HP15_756 0.78 -4.9 767,211 + HP15_756 0.84 -3.4 767,418 - -0.9
Or see this region's nucleotide sequence