Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_745 and HP15_746 are separated by 246 nucleotides HP15_746 and HP15_747 are separated by 165 nucleotides
HP15_745: HP15_745 - conserved hypothetical protein, at 753,496 to 754,257
_745
HP15_746: HP15_746 - two component transcriptional regulator, winged helix family, at 754,504 to 755,241
_746
HP15_747: HP15_747 - integral membrane sensor signal transduction histidine kinase, at 755,407 to 756,882
_747
Position (kb) 754
755
756 Strain fitness (log2 ratio) -1
0
1
2 at 753.560 kb on + strand at 753.575 kb on - strand, within HP15_745 at 753.635 kb on + strand, within HP15_745 at 753.635 kb on + strand, within HP15_745 at 753.754 kb on - strand, within HP15_745 at 753.863 kb on - strand, within HP15_745 at 753.863 kb on - strand at 753.934 kb on + strand, within HP15_745 at 754.043 kb on + strand, within HP15_745 at 754.072 kb on + strand, within HP15_745 at 754.175 kb on + strand, within HP15_745 at 754.185 kb on + strand at 754.193 kb on - strand at 754.335 kb on - strand at 754.382 kb on + strand at 754.511 kb on + strand at 754.610 kb on + strand, within HP15_746 at 755.008 kb on + strand, within HP15_746 at 755.016 kb on - strand, within HP15_746 at 755.016 kb on - strand, within HP15_746 at 755.124 kb on - strand, within HP15_746 at 755.137 kb on - strand, within HP15_746 at 755.193 kb on + strand at 755.193 kb on + strand at 755.215 kb on + strand at 755.298 kb on + strand at 755.792 kb on + strand, within HP15_747 at 755.925 kb on - strand, within HP15_747
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 753,560 + -0.2 753,575 - HP15_745 0.10 -0.8 753,635 + HP15_745 0.18 +1.3 753,635 + HP15_745 0.18 +0.8 753,754 - HP15_745 0.34 -0.2 753,863 - HP15_745 0.48 -0.4 753,863 - -1.1 753,934 + HP15_745 0.57 +0.8 754,043 + HP15_745 0.72 +0.3 754,072 + HP15_745 0.76 +1.1 754,175 + HP15_745 0.89 +0.4 754,185 + +0.3 754,193 - -0.8 754,335 - -1.7 754,382 + +0.7 754,511 + +0.1 754,610 + HP15_746 0.14 +1.0 755,008 + HP15_746 0.68 +0.1 755,016 - HP15_746 0.69 -0.1 755,016 - HP15_746 0.69 +0.9 755,124 - HP15_746 0.84 +1.2 755,137 - HP15_746 0.86 +0.3 755,193 + +1.5 755,193 + +1.3 755,215 + +2.3 755,298 + +0.3 755,792 + HP15_747 0.26 +1.1 755,925 - HP15_747 0.35 +0.5
Or see this region's nucleotide sequence