Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_598 and HP15_599 overlap by 4 nucleotides HP15_599 and HP15_600 overlap by 4 nucleotides
HP15_598: HP15_598 - phosphoesterase, PA-phosphatase, at 618,473 to 619,930
_598
HP15_599: HP15_599 - membrane protein containing Diguanylate cyclase, predicted domains, at 619,927 to 620,925
_599
HP15_600: HP15_600 - GGDEF domain protein, at 620,922 to 621,938
_600
Position (kb) 619
620
621 Strain fitness (log2 ratio) -1
0
1
2
3 at 619.000 kb on - strand, within HP15_598 at 619.159 kb on - strand, within HP15_598 at 619.159 kb on - strand, within HP15_598 at 619.181 kb on - strand, within HP15_598 at 619.181 kb on - strand, within HP15_598 at 619.191 kb on - strand, within HP15_598 at 619.282 kb on + strand, within HP15_598 at 619.283 kb on - strand, within HP15_598 at 619.352 kb on - strand, within HP15_598 at 619.431 kb on - strand, within HP15_598 at 619.431 kb on - strand, within HP15_598 at 619.451 kb on + strand, within HP15_598 at 619.514 kb on + strand, within HP15_598 at 619.731 kb on + strand, within HP15_598 at 619.731 kb on + strand, within HP15_598 at 619.813 kb on - strand at 619.828 kb on - strand at 619.856 kb on + strand at 619.950 kb on + strand at 620.025 kb on + strand at 620.039 kb on + strand, within HP15_599 at 620.195 kb on + strand, within HP15_599 at 620.202 kb on + strand, within HP15_599 at 620.210 kb on - strand, within HP15_599 at 620.210 kb on - strand, within HP15_599 at 620.233 kb on - strand, within HP15_599 at 620.254 kb on - strand, within HP15_599 at 620.254 kb on - strand, within HP15_599 at 620.340 kb on - strand, within HP15_599 at 620.343 kb on - strand, within HP15_599 at 620.436 kb on + strand, within HP15_599 at 620.602 kb on - strand, within HP15_599 at 620.701 kb on - strand, within HP15_599 at 620.706 kb on - strand, within HP15_599 at 620.732 kb on + strand, within HP15_599 at 620.881 kb on - strand at 620.895 kb on + strand at 620.896 kb on + strand at 620.935 kb on - strand at 620.951 kb on + strand at 620.980 kb on + strand at 621.006 kb on + strand at 621.011 kb on + strand at 621.029 kb on - strand, within HP15_600 at 621.222 kb on - strand, within HP15_600 at 621.323 kb on - strand, within HP15_600 at 621.371 kb on - strand, within HP15_600 at 621.556 kb on - strand, within HP15_600 at 621.646 kb on + strand, within HP15_600 at 621.646 kb on + strand, within HP15_600 at 621.681 kb on + strand, within HP15_600 at 621.831 kb on + strand, within HP15_600 at 621.839 kb on - strand at 621.853 kb on + strand at 621.861 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 619,000 - HP15_598 0.36 +1.2 619,159 - HP15_598 0.47 -0.1 619,159 - HP15_598 0.47 +0.4 619,181 - HP15_598 0.49 +0.1 619,181 - HP15_598 0.49 +0.2 619,191 - HP15_598 0.49 +0.1 619,282 + HP15_598 0.55 +0.3 619,283 - HP15_598 0.56 +1.3 619,352 - HP15_598 0.60 +0.1 619,431 - HP15_598 0.66 +1.0 619,431 - HP15_598 0.66 +0.9 619,451 + HP15_598 0.67 +0.2 619,514 + HP15_598 0.71 +1.0 619,731 + HP15_598 0.86 +1.1 619,731 + HP15_598 0.86 +0.2 619,813 - -0.5 619,828 - +1.0 619,856 + -0.2 619,950 + +1.2 620,025 + -0.3 620,039 + HP15_599 0.11 +1.1 620,195 + HP15_599 0.27 +1.4 620,202 + HP15_599 0.28 +0.7 620,210 - HP15_599 0.28 +1.3 620,210 - HP15_599 0.28 +1.4 620,233 - HP15_599 0.31 -0.1 620,254 - HP15_599 0.33 +1.0 620,254 - HP15_599 0.33 +2.8 620,340 - HP15_599 0.41 -0.0 620,343 - HP15_599 0.42 +1.9 620,436 + HP15_599 0.51 +1.2 620,602 - HP15_599 0.68 +1.2 620,701 - HP15_599 0.77 +0.9 620,706 - HP15_599 0.78 +2.0 620,732 + HP15_599 0.81 +1.5 620,881 - +0.8 620,895 + +1.6 620,896 + +1.9 620,935 - -0.3 620,951 + +0.7 620,980 + +1.2 621,006 + +1.2 621,011 + -0.0 621,029 - HP15_600 0.11 +1.1 621,222 - HP15_600 0.29 +1.0 621,323 - HP15_600 0.39 +1.1 621,371 - HP15_600 0.44 -0.1 621,556 - HP15_600 0.62 -0.2 621,646 + HP15_600 0.71 +1.4 621,646 + HP15_600 0.71 +1.3 621,681 + HP15_600 0.75 +1.0 621,831 + HP15_600 0.89 +1.6 621,839 - -0.4 621,853 + +0.5 621,861 - +0.8
Or see this region's nucleotide sequence