Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_463 and HP15_464 are separated by 122 nucleotides HP15_464 and HP15_465 are separated by 55 nucleotides
HP15_463: HP15_463 - fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain protein, at 468,120 to 470,426
_463
HP15_464: HP15_464 - protein containing Patatin domain, at 470,549 to 471,790
_464
HP15_465: HP15_465 - heat shock protein HslVU, ATPase subunit HslU, at 471,846 to 473,174
_465
Position (kb) 470
471
472 Strain fitness (log2 ratio) -2
-1
0
1 at 469.736 kb on - strand, within HP15_463 at 469.900 kb on - strand, within HP15_463 at 469.995 kb on + strand, within HP15_463 at 470.041 kb on + strand, within HP15_463 at 470.060 kb on - strand, within HP15_463 at 470.096 kb on + strand, within HP15_463 at 470.311 kb on + strand at 470.365 kb on + strand at 470.373 kb on - strand at 470.433 kb on + strand at 470.451 kb on - strand at 470.451 kb on - strand at 470.462 kb on + strand at 470.504 kb on - strand at 470.547 kb on - strand at 470.547 kb on - strand at 470.589 kb on + strand at 470.620 kb on - strand at 470.851 kb on - strand, within HP15_464 at 471.007 kb on + strand, within HP15_464 at 471.009 kb on + strand, within HP15_464 at 471.020 kb on - strand, within HP15_464 at 471.238 kb on - strand, within HP15_464 at 471.238 kb on - strand, within HP15_464 at 471.256 kb on + strand, within HP15_464 at 471.390 kb on + strand, within HP15_464 at 471.587 kb on + strand, within HP15_464 at 471.813 kb on - strand at 471.861 kb on + strand at 471.920 kb on + strand at 472.082 kb on + strand, within HP15_465 at 472.184 kb on + strand, within HP15_465 at 472.234 kb on + strand, within HP15_465 at 472.234 kb on + strand, within HP15_465 at 472.234 kb on + strand, within HP15_465
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 469,736 - HP15_463 0.70 -1.3 469,900 - HP15_463 0.77 -1.7 469,995 + HP15_463 0.81 -0.8 470,041 + HP15_463 0.83 -1.1 470,060 - HP15_463 0.84 -2.6 470,096 + HP15_463 0.86 -2.6 470,311 + -2.2 470,365 + -0.3 470,373 - +1.4 470,433 + +0.3 470,451 - -0.2 470,451 - -0.5 470,462 + +0.6 470,504 - -0.2 470,547 - -0.9 470,547 - -0.5 470,589 + -0.5 470,620 - -1.1 470,851 - HP15_464 0.24 +0.8 471,007 + HP15_464 0.37 +0.5 471,009 + HP15_464 0.37 -0.0 471,020 - HP15_464 0.38 -1.9 471,238 - HP15_464 0.55 -0.7 471,238 - HP15_464 0.55 -0.9 471,256 + HP15_464 0.57 -1.3 471,390 + HP15_464 0.68 +0.6 471,587 + HP15_464 0.84 +0.7 471,813 - -0.0 471,861 + -0.7 471,920 + -0.6 472,082 + HP15_465 0.18 -0.3 472,184 + HP15_465 0.25 -0.2 472,234 + HP15_465 0.29 -0.2 472,234 + HP15_465 0.29 +0.1 472,234 + HP15_465 0.29 +0.1
Or see this region's nucleotide sequence