Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g159

Experiment: monoculture; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g158 and HP15_p187g159 are separated by 168 nucleotidesHP15_p187g159 and HP15_p187g160 are separated by 17 nucleotides HP15_p187g158: HP15_p187g158 - alpha/beta hydrolase fold protein, at 159,346 to 160,383 _p187g158 HP15_p187g159: HP15_p187g159 - kelch domain protein, at 160,552 to 162,888 _p187g159 HP15_p187g160: HP15_p187g160 - conserved hypothetical protein, secreted, at 162,906 to 163,457 _p187g160 Position (kb) 160 161 162 163Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 159.670 kb on + strand, within HP15_p187g158at 159.670 kb on + strand, within HP15_p187g158at 159.677 kb on - strand, within HP15_p187g158at 159.730 kb on + strand, within HP15_p187g158at 159.730 kb on - strand, within HP15_p187g158at 159.748 kb on - strand, within HP15_p187g158at 159.812 kb on + strand, within HP15_p187g158at 159.812 kb on + strand, within HP15_p187g158at 159.812 kb on + strand, within HP15_p187g158at 159.814 kb on + strand, within HP15_p187g158at 159.832 kb on + strand, within HP15_p187g158at 159.906 kb on + strand, within HP15_p187g158at 159.906 kb on + strand, within HP15_p187g158at 159.909 kb on - strand, within HP15_p187g158at 159.914 kb on - strand, within HP15_p187g158at 159.944 kb on + strand, within HP15_p187g158at 159.996 kb on + strand, within HP15_p187g158at 159.996 kb on + strand, within HP15_p187g158at 160.004 kb on - strand, within HP15_p187g158at 160.004 kb on - strand, within HP15_p187g158at 160.004 kb on - strand, within HP15_p187g158at 160.012 kb on + strand, within HP15_p187g158at 160.066 kb on + strand, within HP15_p187g158at 160.067 kb on - strand, within HP15_p187g158at 160.114 kb on + strand, within HP15_p187g158at 160.122 kb on - strand, within HP15_p187g158at 160.128 kb on + strand, within HP15_p187g158at 160.146 kb on - strand, within HP15_p187g158at 160.158 kb on + strand, within HP15_p187g158at 160.187 kb on - strand, within HP15_p187g158at 160.198 kb on + strand, within HP15_p187g158at 160.198 kb on + strand, within HP15_p187g158at 160.206 kb on - strand, within HP15_p187g158at 160.208 kb on + strand, within HP15_p187g158at 160.231 kb on + strand, within HP15_p187g158at 160.233 kb on + strand, within HP15_p187g158at 160.234 kb on - strand, within HP15_p187g158at 160.236 kb on + strand, within HP15_p187g158at 160.239 kb on - strand, within HP15_p187g158at 160.239 kb on - strand, within HP15_p187g158at 160.300 kb on + strandat 160.306 kb on + strandat 160.308 kb on - strandat 160.308 kb on - strandat 160.320 kb on + strandat 160.328 kb on - strandat 160.355 kb on + strandat 160.363 kb on - strandat 160.380 kb on - strandat 160.400 kb on + strandat 160.589 kb on + strandat 160.594 kb on + strandat 160.594 kb on + strandat 160.602 kb on - strandat 160.602 kb on - strandat 160.665 kb on + strandat 160.712 kb on - strandat 160.783 kb on + strandat 160.851 kb on - strand, within HP15_p187g159at 160.860 kb on + strand, within HP15_p187g159at 160.860 kb on + strand, within HP15_p187g159at 160.896 kb on - strand, within HP15_p187g159at 160.940 kb on + strand, within HP15_p187g159at 160.958 kb on - strand, within HP15_p187g159at 160.958 kb on - strand, within HP15_p187g159at 160.963 kb on - strand, within HP15_p187g159at 160.971 kb on - strand, within HP15_p187g159at 160.994 kb on + strand, within HP15_p187g159at 160.994 kb on + strand, within HP15_p187g159at 161.002 kb on - strand, within HP15_p187g159at 161.077 kb on + strand, within HP15_p187g159at 161.090 kb on - strand, within HP15_p187g159at 161.092 kb on + strand, within HP15_p187g159at 161.092 kb on - strand, within HP15_p187g159at 161.094 kb on + strand, within HP15_p187g159at 161.107 kb on + strand, within HP15_p187g159at 161.107 kb on + strand, within HP15_p187g159at 161.128 kb on + strand, within HP15_p187g159at 161.128 kb on + strand, within HP15_p187g159at 161.172 kb on + strand, within HP15_p187g159at 161.230 kb on + strand, within HP15_p187g159at 161.377 kb on - strand, within HP15_p187g159at 161.447 kb on - strand, within HP15_p187g159at 161.611 kb on + strand, within HP15_p187g159at 161.612 kb on + strand, within HP15_p187g159at 161.612 kb on + strand, within HP15_p187g159at 161.620 kb on - strand, within HP15_p187g159at 161.631 kb on + strand, within HP15_p187g159at 161.639 kb on - strand, within HP15_p187g159at 161.641 kb on - strand, within HP15_p187g159at 161.666 kb on + strand, within HP15_p187g159at 161.667 kb on + strand, within HP15_p187g159at 161.674 kb on - strand, within HP15_p187g159at 161.695 kb on + strand, within HP15_p187g159at 161.703 kb on - strand, within HP15_p187g159at 161.703 kb on - strand, within HP15_p187g159at 161.703 kb on - strand, within HP15_p187g159at 161.738 kb on + strand, within HP15_p187g159at 161.746 kb on - strand, within HP15_p187g159at 161.754 kb on - strand, within HP15_p187g159at 161.812 kb on - strand, within HP15_p187g159at 161.812 kb on - strand, within HP15_p187g159at 161.846 kb on + strand, within HP15_p187g159at 161.853 kb on + strand, within HP15_p187g159at 161.906 kb on + strand, within HP15_p187g159at 161.989 kb on + strand, within HP15_p187g159at 161.989 kb on + strand, within HP15_p187g159at 161.997 kb on - strand, within HP15_p187g159at 162.012 kb on - strand, within HP15_p187g159at 162.048 kb on + strand, within HP15_p187g159at 162.050 kb on + strand, within HP15_p187g159at 162.058 kb on - strand, within HP15_p187g159at 162.085 kb on - strand, within HP15_p187g159at 162.107 kb on + strand, within HP15_p187g159at 162.107 kb on + strand, within HP15_p187g159at 162.107 kb on + strand, within HP15_p187g159at 162.115 kb on - strand, within HP15_p187g159at 162.121 kb on + strand, within HP15_p187g159at 162.285 kb on + strand, within HP15_p187g159at 162.286 kb on - strand, within HP15_p187g159at 162.293 kb on - strand, within HP15_p187g159at 162.295 kb on + strand, within HP15_p187g159at 162.297 kb on + strand, within HP15_p187g159at 162.297 kb on + strand, within HP15_p187g159at 162.354 kb on + strand, within HP15_p187g159at 162.362 kb on - strand, within HP15_p187g159at 162.406 kb on + strand, within HP15_p187g159at 162.416 kb on + strand, within HP15_p187g159at 162.428 kb on - strand, within HP15_p187g159at 162.447 kb on + strand, within HP15_p187g159at 162.447 kb on + strand, within HP15_p187g159at 162.455 kb on - strand, within HP15_p187g159at 162.455 kb on - strand, within HP15_p187g159at 162.455 kb on - strand, within HP15_p187g159at 162.455 kb on - strand, within HP15_p187g159at 162.455 kb on - strand, within HP15_p187g159at 162.469 kb on + strand, within HP15_p187g159at 162.516 kb on + strand, within HP15_p187g159at 162.521 kb on + strand, within HP15_p187g159at 162.564 kb on - strand, within HP15_p187g159at 162.628 kb on + strand, within HP15_p187g159at 162.636 kb on - strand, within HP15_p187g159at 162.672 kb on + strandat 162.691 kb on + strandat 162.695 kb on + strandat 162.699 kb on - strandat 162.699 kb on - strandat 162.699 kb on - strandat 162.704 kb on - strandat 162.731 kb on + strandat 162.745 kb on + strandat 162.759 kb on - strandat 162.770 kb on + strandat 162.794 kb on - strandat 162.802 kb on - strandat 162.802 kb on - strandat 162.835 kb on - strandat 162.914 kb on + strandat 162.914 kb on + strandat 162.919 kb on + strandat 162.919 kb on + strandat 162.927 kb on - strandat 162.927 kb on - strandat 162.927 kb on - strandat 162.965 kb on - strand, within HP15_p187g160at 162.981 kb on + strand, within HP15_p187g160at 162.989 kb on - strand, within HP15_p187g160at 163.016 kb on + strand, within HP15_p187g160at 163.023 kb on + strand, within HP15_p187g160at 163.023 kb on + strand, within HP15_p187g160at 163.023 kb on + strand, within HP15_p187g160at 163.023 kb on + strand, within HP15_p187g160at 163.028 kb on + strand, within HP15_p187g160at 163.031 kb on - strand, within HP15_p187g160at 163.031 kb on - strand, within HP15_p187g160at 163.031 kb on - strand, within HP15_p187g160at 163.062 kb on + strand, within HP15_p187g160at 163.100 kb on - strand, within HP15_p187g160at 163.104 kb on + strand, within HP15_p187g160at 163.112 kb on - strand, within HP15_p187g160at 163.140 kb on + strand, within HP15_p187g160at 163.148 kb on - strand, within HP15_p187g160at 163.238 kb on + strand, within HP15_p187g160at 163.248 kb on - strand, within HP15_p187g160at 163.300 kb on + strand, within HP15_p187g160at 163.335 kb on + strand, within HP15_p187g160at 163.340 kb on + strand, within HP15_p187g160at 163.343 kb on - strand, within HP15_p187g160at 163.343 kb on - strand, within HP15_p187g160at 163.343 kb on - strand, within HP15_p187g160at 163.344 kb on + strand, within HP15_p187g160at 163.345 kb on + strand, within HP15_p187g160at 163.353 kb on - strand, within HP15_p187g160at 163.357 kb on + strand, within HP15_p187g160at 163.377 kb on + strand, within HP15_p187g160at 163.378 kb on - strand, within HP15_p187g160at 163.407 kb on + strandat 163.486 kb on + strandat 163.487 kb on - strandat 163.494 kb on - strandat 163.560 kb on + strandat 163.560 kb on + strandat 163.568 kb on - strandat 163.628 kb on + strandat 163.715 kb on - strandat 163.738 kb on + strandat 163.776 kb on + strandat 163.784 kb on - strandat 163.789 kb on - strandat 163.806 kb on - strandat 163.846 kb on - strandat 163.868 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
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159,670 + HP15_p187g158 0.31 +0.1
159,670 + HP15_p187g158 0.31 -1.4
159,677 - HP15_p187g158 0.32 +1.6
159,730 + HP15_p187g158 0.37 +0.3
159,730 - HP15_p187g158 0.37 -1.4
159,748 - HP15_p187g158 0.39 +0.1
159,812 + HP15_p187g158 0.45 -0.5
159,812 + HP15_p187g158 0.45 +0.3
159,812 + HP15_p187g158 0.45 -0.5
159,814 + HP15_p187g158 0.45 -0.2
159,832 + HP15_p187g158 0.47 +0.1
159,906 + HP15_p187g158 0.54 +0.2
159,906 + HP15_p187g158 0.54 +0.1
159,909 - HP15_p187g158 0.54 -0.8
159,914 - HP15_p187g158 0.55 +0.6
159,944 + HP15_p187g158 0.58 -0.1
159,996 + HP15_p187g158 0.63 -0.4
159,996 + HP15_p187g158 0.63 +0.4
160,004 - HP15_p187g158 0.63 -0.3
160,004 - HP15_p187g158 0.63 +1.1
160,004 - HP15_p187g158 0.63 -0.0
160,012 + HP15_p187g158 0.64 +0.6
160,066 + HP15_p187g158 0.69 -1.9
160,067 - HP15_p187g158 0.69 +0.5
160,114 + HP15_p187g158 0.74 +1.9
160,122 - HP15_p187g158 0.75 +0.3
160,128 + HP15_p187g158 0.75 +0.3
160,146 - HP15_p187g158 0.77 +0.6
160,158 + HP15_p187g158 0.78 -0.2
160,187 - HP15_p187g158 0.81 +1.7
160,198 + HP15_p187g158 0.82 -0.6
160,198 + HP15_p187g158 0.82 +0.3
160,206 - HP15_p187g158 0.83 -0.1
160,208 + HP15_p187g158 0.83 +0.8
160,231 + HP15_p187g158 0.85 -0.6
160,233 + HP15_p187g158 0.85 +0.7
160,234 - HP15_p187g158 0.86 +0.7
160,236 + HP15_p187g158 0.86 -0.1
160,239 - HP15_p187g158 0.86 +0.0
160,239 - HP15_p187g158 0.86 +0.5
160,300 + -0.0
160,306 + +0.3
160,308 - -1.6
160,308 - +0.5
160,320 + +0.4
160,328 - -0.2
160,355 + +0.3
160,363 - +0.8
160,380 - +0.9
160,400 + -0.6
160,589 + +0.2
160,594 + +0.2
160,594 + +1.3
160,602 - +1.3
160,602 - +0.4
160,665 + -0.3
160,712 - +0.9
160,783 + -0.2
160,851 - HP15_p187g159 0.13 +0.2
160,860 + HP15_p187g159 0.13 +0.0
160,860 + HP15_p187g159 0.13 -0.1
160,896 - HP15_p187g159 0.15 -0.8
160,940 + HP15_p187g159 0.17 +0.0
160,958 - HP15_p187g159 0.17 -0.0
160,958 - HP15_p187g159 0.17 +0.2
160,963 - HP15_p187g159 0.18 -0.7
160,971 - HP15_p187g159 0.18 -0.2
160,994 + HP15_p187g159 0.19 -0.6
160,994 + HP15_p187g159 0.19 +0.5
161,002 - HP15_p187g159 0.19 +0.8
161,077 + HP15_p187g159 0.22 +0.1
161,090 - HP15_p187g159 0.23 +0.6
161,092 + HP15_p187g159 0.23 -0.3
161,092 - HP15_p187g159 0.23 -0.8
161,094 + HP15_p187g159 0.23 +1.1
161,107 + HP15_p187g159 0.24 -0.0
161,107 + HP15_p187g159 0.24 +1.4
161,128 + HP15_p187g159 0.25 -0.2
161,128 + HP15_p187g159 0.25 -0.2
161,172 + HP15_p187g159 0.27 +1.8
161,230 + HP15_p187g159 0.29 -0.2
161,377 - HP15_p187g159 0.35 -0.4
161,447 - HP15_p187g159 0.38 -0.2
161,611 + HP15_p187g159 0.45 +0.5
161,612 + HP15_p187g159 0.45 -0.0
161,612 + HP15_p187g159 0.45 -0.1
161,620 - HP15_p187g159 0.46 -0.2
161,631 + HP15_p187g159 0.46 +0.5
161,639 - HP15_p187g159 0.47 +0.5
161,641 - HP15_p187g159 0.47 +0.1
161,666 + HP15_p187g159 0.48 +0.2
161,667 + HP15_p187g159 0.48 +1.1
161,674 - HP15_p187g159 0.48 +0.8
161,695 + HP15_p187g159 0.49 -0.4
161,703 - HP15_p187g159 0.49 -0.1
161,703 - HP15_p187g159 0.49 +1.4
161,703 - HP15_p187g159 0.49 -0.1
161,738 + HP15_p187g159 0.51 +0.6
161,746 - HP15_p187g159 0.51 -0.6
161,754 - HP15_p187g159 0.51 -0.6
161,812 - HP15_p187g159 0.54 +0.1
161,812 - HP15_p187g159 0.54 -0.5
161,846 + HP15_p187g159 0.55 +0.0
161,853 + HP15_p187g159 0.56 +0.5
161,906 + HP15_p187g159 0.58 +0.1
161,989 + HP15_p187g159 0.61 -0.2
161,989 + HP15_p187g159 0.61 -0.0
161,997 - HP15_p187g159 0.62 -0.3
162,012 - HP15_p187g159 0.62 -1.0
162,048 + HP15_p187g159 0.64 +1.4
162,050 + HP15_p187g159 0.64 -0.1
162,058 - HP15_p187g159 0.64 -0.3
162,085 - HP15_p187g159 0.66 -0.5
162,107 + HP15_p187g159 0.67 -0.3
162,107 + HP15_p187g159 0.67 +0.1
162,107 + HP15_p187g159 0.67 -1.2
162,115 - HP15_p187g159 0.67 +1.3
162,121 + HP15_p187g159 0.67 +0.1
162,285 + HP15_p187g159 0.74 +0.1
162,286 - HP15_p187g159 0.74 +0.5
162,293 - HP15_p187g159 0.74 -0.4
162,295 + HP15_p187g159 0.75 +0.9
162,297 + HP15_p187g159 0.75 -3.0
162,297 + HP15_p187g159 0.75 +0.5
162,354 + HP15_p187g159 0.77 +0.3
162,362 - HP15_p187g159 0.77 -0.1
162,406 + HP15_p187g159 0.79 +1.2
162,416 + HP15_p187g159 0.80 +0.5
162,428 - HP15_p187g159 0.80 -0.2
162,447 + HP15_p187g159 0.81 -0.2
162,447 + HP15_p187g159 0.81 +1.0
162,455 - HP15_p187g159 0.81 -0.4
162,455 - HP15_p187g159 0.81 +0.3
162,455 - HP15_p187g159 0.81 -0.5
162,455 - HP15_p187g159 0.81 +0.3
162,455 - HP15_p187g159 0.81 -1.6
162,469 + HP15_p187g159 0.82 +0.1
162,516 + HP15_p187g159 0.84 +0.0
162,521 + HP15_p187g159 0.84 -0.7
162,564 - HP15_p187g159 0.86 -1.4
162,628 + HP15_p187g159 0.89 +0.5
162,636 - HP15_p187g159 0.89 -0.1
162,672 + -0.3
162,691 + -0.0
162,695 + +0.2
162,699 - +0.0
162,699 - -0.2
162,699 - -0.1
162,704 - -0.5
162,731 + +0.9
162,745 + -0.1
162,759 - +0.8
162,770 + +0.5
162,794 - -1.7
162,802 - +0.2
162,802 - +0.0
162,835 - -2.0
162,914 + -0.3
162,914 + -0.9
162,919 + +1.0
162,919 + +0.1
162,927 - -0.6
162,927 - +0.8
162,927 - -0.1
162,965 - HP15_p187g160 0.11 -0.1
162,981 + HP15_p187g160 0.14 -1.4
162,989 - HP15_p187g160 0.15 -1.2
163,016 + HP15_p187g160 0.20 +0.5
163,023 + HP15_p187g160 0.21 -0.0
163,023 + HP15_p187g160 0.21 +0.3
163,023 + HP15_p187g160 0.21 +0.5
163,023 + HP15_p187g160 0.21 -2.3
163,028 + HP15_p187g160 0.22 -0.3
163,031 - HP15_p187g160 0.23 +0.1
163,031 - HP15_p187g160 0.23 +0.3
163,031 - HP15_p187g160 0.23 -0.4
163,062 + HP15_p187g160 0.28 +0.7
163,100 - HP15_p187g160 0.35 +0.2
163,104 + HP15_p187g160 0.36 +0.4
163,112 - HP15_p187g160 0.37 -0.3
163,140 + HP15_p187g160 0.42 +0.9
163,148 - HP15_p187g160 0.44 -0.6
163,238 + HP15_p187g160 0.60 +1.6
163,248 - HP15_p187g160 0.62 -0.2
163,300 + HP15_p187g160 0.71 +0.3
163,335 + HP15_p187g160 0.78 -0.5
163,340 + HP15_p187g160 0.79 -0.1
163,343 - HP15_p187g160 0.79 -2.7
163,343 - HP15_p187g160 0.79 +0.6
163,343 - HP15_p187g160 0.79 -0.2
163,344 + HP15_p187g160 0.79 +1.0
163,345 + HP15_p187g160 0.80 -0.1
163,353 - HP15_p187g160 0.81 -0.2
163,357 + HP15_p187g160 0.82 -0.5
163,377 + HP15_p187g160 0.85 +0.2
163,378 - HP15_p187g160 0.86 -0.5
163,407 + -0.4
163,486 + +1.6
163,487 - +0.7
163,494 - +1.0
163,560 + -0.2
163,560 + -2.3
163,568 - +0.2
163,628 + +0.2
163,715 - -0.6
163,738 + -0.3
163,776 + +0.7
163,784 - +0.1
163,789 - +0.6
163,806 - +0.6
163,846 - +0.2
163,868 - -0.4

Or see this region's nucleotide sequence