Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2645 and HP15_2646 are separated by 85 nucleotides HP15_2646 and HP15_2647 are separated by 99 nucleotides
HP15_2645: HP15_2645 - methyl-accepting chemotaxis protein, at 2,794,335 to 2,796,212
_2645
HP15_2646: HP15_2646 - radical SAM domain protein, at 2,796,298 to 2,797,359
_2646
HP15_2647: HP15_2647 - peptidoglycan-binding domain 1 protein, at 2,797,459 to 2,799,111
_2647
Position (kb)
2796
2797
2798 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2795.484 kb on - strand, within HP15_2645 at 2795.535 kb on - strand, within HP15_2645 at 2795.562 kb on + strand, within HP15_2645 at 2795.570 kb on - strand, within HP15_2645 at 2795.644 kb on - strand, within HP15_2645 at 2795.726 kb on - strand, within HP15_2645 at 2795.928 kb on + strand, within HP15_2645 at 2795.943 kb on + strand, within HP15_2645 at 2796.053 kb on - strand at 2796.182 kb on + strand at 2796.186 kb on - strand at 2796.207 kb on + strand at 2796.219 kb on + strand at 2796.227 kb on - strand at 2796.243 kb on + strand at 2796.316 kb on + strand at 2796.345 kb on + strand at 2796.385 kb on - strand at 2796.489 kb on - strand, within HP15_2646 at 2796.545 kb on + strand, within HP15_2646 at 2796.645 kb on - strand, within HP15_2646 at 2796.649 kb on + strand, within HP15_2646 at 2796.806 kb on + strand, within HP15_2646 at 2796.840 kb on + strand, within HP15_2646 at 2796.840 kb on + strand, within HP15_2646 at 2796.848 kb on - strand, within HP15_2646 at 2796.876 kb on - strand, within HP15_2646 at 2796.927 kb on + strand, within HP15_2646 at 2796.945 kb on + strand, within HP15_2646 at 2797.139 kb on + strand, within HP15_2646 at 2797.147 kb on - strand, within HP15_2646 at 2797.187 kb on + strand, within HP15_2646 at 2797.245 kb on - strand, within HP15_2646 at 2797.295 kb on + strand at 2797.351 kb on + strand at 2797.402 kb on + strand at 2797.431 kb on + strand at 2797.694 kb on + strand, within HP15_2647 at 2797.771 kb on - strand, within HP15_2647 at 2797.804 kb on - strand, within HP15_2647 at 2797.823 kb on + strand, within HP15_2647 at 2797.828 kb on - strand, within HP15_2647 at 2798.000 kb on + strand, within HP15_2647 at 2798.028 kb on + strand, within HP15_2647 at 2798.033 kb on + strand, within HP15_2647 at 2798.033 kb on + strand, within HP15_2647 at 2798.080 kb on + strand, within HP15_2647 at 2798.155 kb on - strand, within HP15_2647 at 2798.175 kb on + strand, within HP15_2647
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 2,795,484 - HP15_2645 0.61 +0.3 2,795,535 - HP15_2645 0.64 +2.2 2,795,562 + HP15_2645 0.65 -0.4 2,795,570 - HP15_2645 0.66 -0.6 2,795,644 - HP15_2645 0.70 +0.5 2,795,726 - HP15_2645 0.74 -0.6 2,795,928 + HP15_2645 0.85 -1.1 2,795,943 + HP15_2645 0.86 -0.8 2,796,053 - -0.4 2,796,182 + +0.0 2,796,186 - +0.9 2,796,207 + +0.1 2,796,219 + +0.5 2,796,227 - -0.5 2,796,243 + +0.2 2,796,316 + -1.8 2,796,345 + +0.5 2,796,385 - +0.4 2,796,489 - HP15_2646 0.18 -0.8 2,796,545 + HP15_2646 0.23 -0.1 2,796,645 - HP15_2646 0.33 +0.4 2,796,649 + HP15_2646 0.33 -0.3 2,796,806 + HP15_2646 0.48 +1.2 2,796,840 + HP15_2646 0.51 -1.8 2,796,840 + HP15_2646 0.51 +0.8 2,796,848 - HP15_2646 0.52 +0.3 2,796,876 - HP15_2646 0.54 +0.6 2,796,927 + HP15_2646 0.59 -0.5 2,796,945 + HP15_2646 0.61 -0.7 2,797,139 + HP15_2646 0.79 -1.9 2,797,147 - HP15_2646 0.80 -1.0 2,797,187 + HP15_2646 0.84 -2.0 2,797,245 - HP15_2646 0.89 +0.5 2,797,295 + -0.3 2,797,351 + -0.3 2,797,402 + -1.1 2,797,431 + +0.4 2,797,694 + HP15_2647 0.14 -0.2 2,797,771 - HP15_2647 0.19 -0.2 2,797,804 - HP15_2647 0.21 +0.9 2,797,823 + HP15_2647 0.22 +1.1 2,797,828 - HP15_2647 0.22 +0.5 2,798,000 + HP15_2647 0.33 +0.4 2,798,028 + HP15_2647 0.34 -0.7 2,798,033 + HP15_2647 0.35 +0.8 2,798,033 + HP15_2647 0.35 -1.5 2,798,080 + HP15_2647 0.38 +0.1 2,798,155 - HP15_2647 0.42 +0.1 2,798,175 + HP15_2647 0.43 -0.5
Or see this region's nucleotide sequence