Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2505 and HP15_2506 overlap by 6 nucleotides HP15_2506 and HP15_2507 are separated by 253 nucleotides HP15_2507 and HP15_2508 are separated by 15 nucleotides HP15_2508 and HP15_2509 are separated by 161 nucleotides
HP15_2505: HP15_2505 - iron-sulfur cluster binding protein, at 2,646,155 to 2,647,234
_2505
HP15_2506: HP15_2506 - oligoribonuclease, at 2,647,229 to 2,647,771
_2506
HP15_2507: HP15_2507 - ribosome-associated GTPase, at 2,648,025 to 2,649,080
_2507
HP15_2508: HP15_2508 - OmpA/MotB domain protein, at 2,649,096 to 2,649,836
_2508
HP15_2509: HP15_2509 - hypothetical protein, at 2,649,998 to 2,650,111
_2509
Position (kb)
2648
2649
2650 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2647.029 kb on + strand, within HP15_2505 at 2647.052 kb on - strand, within HP15_2505 at 2647.091 kb on + strand, within HP15_2505 at 2647.105 kb on - strand, within HP15_2505 at 2647.120 kb on + strand, within HP15_2505 at 2647.201 kb on + strand at 2647.219 kb on - strand at 2647.227 kb on + strand at 2647.234 kb on - strand at 2647.937 kb on - strand at 2647.974 kb on + strand at 2648.144 kb on + strand, within HP15_2507 at 2648.157 kb on - strand, within HP15_2507 at 2649.311 kb on - strand, within HP15_2508 at 2649.339 kb on - strand, within HP15_2508 at 2649.368 kb on + strand, within HP15_2508 at 2649.403 kb on + strand, within HP15_2508 at 2649.474 kb on - strand, within HP15_2508 at 2649.487 kb on - strand, within HP15_2508 at 2649.514 kb on + strand, within HP15_2508 at 2649.577 kb on + strand, within HP15_2508 at 2649.602 kb on - strand, within HP15_2508 at 2649.649 kb on + strand, within HP15_2508 at 2649.667 kb on + strand, within HP15_2508 at 2649.667 kb on + strand, within HP15_2508 at 2649.733 kb on - strand, within HP15_2508 at 2649.830 kb on + strand at 2650.068 kb on + strand, within HP15_2509 at 2650.076 kb on - strand, within HP15_2509
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 2,647,029 + HP15_2505 0.81 -1.8 2,647,052 - HP15_2505 0.83 -0.3 2,647,091 + HP15_2505 0.87 -1.7 2,647,105 - HP15_2505 0.88 +1.2 2,647,120 + HP15_2505 0.89 +0.6 2,647,201 + +0.5 2,647,219 - +0.3 2,647,227 + +0.3 2,647,234 - -0.4 2,647,937 - +1.3 2,647,974 + -0.6 2,648,144 + HP15_2507 0.11 -1.5 2,648,157 - HP15_2507 0.12 +1.5 2,649,311 - HP15_2508 0.29 +0.7 2,649,339 - HP15_2508 0.33 +2.5 2,649,368 + HP15_2508 0.37 -1.2 2,649,403 + HP15_2508 0.41 -1.5 2,649,474 - HP15_2508 0.51 +0.4 2,649,487 - HP15_2508 0.53 +0.4 2,649,514 + HP15_2508 0.56 +0.5 2,649,577 + HP15_2508 0.65 +0.0 2,649,602 - HP15_2508 0.68 +0.3 2,649,649 + HP15_2508 0.75 -0.1 2,649,667 + HP15_2508 0.77 +1.0 2,649,667 + HP15_2508 0.77 +0.5 2,649,733 - HP15_2508 0.86 +0.7 2,649,830 + +0.7 2,650,068 + HP15_2509 0.61 +0.1 2,650,076 - HP15_2509 0.68 -0.9
Or see this region's nucleotide sequence