Strain Fitness in Marinobacter adhaerens HP15 around HP15_2190

Experiment: monoculture; Experiment C, time point 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2191 and HP15_2190 are separated by 138 nucleotidesHP15_2190 and HP15_2192 overlap by 4 nucleotidesHP15_2192 and HP15_2193 are separated by 39 nucleotides HP15_2191: HP15_2191 - glutaminyl-tRNA synthetase, at 2,307,084 to 2,308,763 _2191 HP15_2190: HP15_2190 - peptidyl-prolyl cis-trans isomerase B, at 2,308,902 to 2,309,402 _2190 HP15_2192: HP15_2192 - UDP-2,3-diacylglucosamine hydrolase, at 2,309,399 to 2,310,124 _2192 HP15_2193: HP15_2193 - amino-acid ABC transporter ATP-binding protein-like protein, at 2,310,164 to 2,310,934 _2193 Position (kb) 2308 2309 2310Strain fitness (log2 ratio) -2 -1 0 1at 2309.072 kb on + strand, within HP15_2190at 2309.220 kb on + strand, within HP15_2190at 2309.296 kb on + strand, within HP15_2190at 2310.281 kb on + strand, within HP15_2193at 2310.321 kb on - strand, within HP15_2193

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
remove
2,309,072 + HP15_2190 0.34 -2.2
2,309,220 + HP15_2190 0.63 -0.4
2,309,296 + HP15_2190 0.79 +0.6
2,310,281 + HP15_2193 0.15 +0.1
2,310,321 - HP15_2193 0.20 +0.4

Or see this region's nucleotide sequence