Strain Fitness in Marinobacter adhaerens HP15 around HP15_1823

Experiment: monoculture; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1821 and HP15_1822 are separated by 34 nucleotidesHP15_1822 and HP15_1823 are separated by 91 nucleotidesHP15_1823 and HP15_1824 are separated by 123 nucleotides HP15_1821: HP15_1821 - amidophosphoribosyltransferase, at 1,917,859 to 1,919,385 _1821 HP15_1822: HP15_1822 - CvpA family protein, at 1,919,420 to 1,919,989 _1822 HP15_1823: HP15_1823 - sporulation domain protein, at 1,920,081 to 1,920,752 _1823 HP15_1824: HP15_1824 - bifunctional protein includes folylpolyglutamate synthase (FPGS) dihydrofolate synthase, at 1,920,876 to 1,922,198 _1824 Position (kb) 1920 1921Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1919.439 kb on + strandat 1919.533 kb on + strand, within HP15_1822at 1919.551 kb on - strand, within HP15_1822at 1919.825 kb on - strand, within HP15_1822at 1919.863 kb on + strand, within HP15_1822at 1919.871 kb on - strand, within HP15_1822at 1920.134 kb on - strandat 1920.565 kb on - strand, within HP15_1823at 1920.805 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
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1,919,439 + -2.3
1,919,533 + HP15_1822 0.20 -3.8
1,919,551 - HP15_1822 0.23 -0.2
1,919,825 - HP15_1822 0.71 -3.4
1,919,863 + HP15_1822 0.78 -5.2
1,919,871 - HP15_1822 0.79 -0.6
1,920,134 - -0.7
1,920,565 - HP15_1823 0.72 -0.5
1,920,805 + -1.5

Or see this region's nucleotide sequence