Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1808 and HP15_1809 overlap by 4 nucleotides HP15_1809 and HP15_1810 are separated by 1 nucleotides
HP15_1808: HP15_1808 - peptide ABC transporter, permease protein, at 1,901,617 to 1,902,702
_1808
HP15_1809: HP15_1809 - peptide ABC transporter, permease protein, at 1,902,699 to 1,903,727
_1809
HP15_1810: HP15_1810 - peptide ABC transporter, ATP-binding protein, at 1,903,729 to 1,905,333
_1810
Position (kb)
1902
1903
1904 Strain fitness (log2 ratio)
-2
-1
0
1 at 1901.725 kb on - strand at 1902.019 kb on - strand, within HP15_1808 at 1902.019 kb on - strand, within HP15_1808 at 1902.108 kb on - strand, within HP15_1808 at 1902.331 kb on - strand, within HP15_1808 at 1902.458 kb on - strand, within HP15_1808 at 1902.497 kb on - strand, within HP15_1808 at 1902.544 kb on - strand, within HP15_1808 at 1902.552 kb on - strand, within HP15_1808 at 1902.562 kb on + strand, within HP15_1808 at 1902.570 kb on - strand, within HP15_1808 at 1902.628 kb on - strand at 1902.833 kb on + strand, within HP15_1809 at 1903.059 kb on + strand, within HP15_1809 at 1903.144 kb on + strand, within HP15_1809 at 1903.144 kb on + strand, within HP15_1809 at 1903.152 kb on - strand, within HP15_1809 at 1903.152 kb on - strand, within HP15_1809 at 1903.197 kb on - strand, within HP15_1809 at 1903.255 kb on - strand, within HP15_1809 at 1903.422 kb on + strand, within HP15_1809 at 1903.466 kb on + strand, within HP15_1809 at 1903.527 kb on + strand, within HP15_1809 at 1903.601 kb on + strand, within HP15_1809 at 1903.621 kb on + strand, within HP15_1809 at 1903.729 kb on - strand at 1903.983 kb on - strand, within HP15_1810 at 1904.043 kb on - strand, within HP15_1810 at 1904.043 kb on - strand, within HP15_1810 at 1904.117 kb on + strand, within HP15_1810 at 1904.117 kb on + strand, within HP15_1810 at 1904.125 kb on - strand, within HP15_1810 at 1904.125 kb on - strand, within HP15_1810 at 1904.125 kb on - strand, within HP15_1810 at 1904.310 kb on + strand, within HP15_1810 at 1904.342 kb on - strand, within HP15_1810 at 1904.369 kb on + strand, within HP15_1810 at 1904.464 kb on - strand, within HP15_1810 at 1904.482 kb on - strand, within HP15_1810
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 1,901,725 - -1.5 1,902,019 - HP15_1808 0.37 +0.1 1,902,019 - HP15_1808 0.37 +0.5 1,902,108 - HP15_1808 0.45 -0.9 1,902,331 - HP15_1808 0.66 +0.3 1,902,458 - HP15_1808 0.77 +0.6 1,902,497 - HP15_1808 0.81 -0.2 1,902,544 - HP15_1808 0.85 -0.6 1,902,552 - HP15_1808 0.86 +0.1 1,902,562 + HP15_1808 0.87 -0.5 1,902,570 - HP15_1808 0.88 -0.9 1,902,628 - -0.3 1,902,833 + HP15_1809 0.13 -0.6 1,903,059 + HP15_1809 0.35 +0.3 1,903,144 + HP15_1809 0.43 -0.4 1,903,144 + HP15_1809 0.43 -0.2 1,903,152 - HP15_1809 0.44 -0.3 1,903,152 - HP15_1809 0.44 -1.6 1,903,197 - HP15_1809 0.48 -1.2 1,903,255 - HP15_1809 0.54 -0.1 1,903,422 + HP15_1809 0.70 -0.8 1,903,466 + HP15_1809 0.75 -0.8 1,903,527 + HP15_1809 0.80 -0.8 1,903,601 + HP15_1809 0.88 -0.1 1,903,621 + HP15_1809 0.90 -1.8 1,903,729 - -0.9 1,903,983 - HP15_1810 0.16 -0.1 1,904,043 - HP15_1810 0.20 +1.3 1,904,043 - HP15_1810 0.20 +0.2 1,904,117 + HP15_1810 0.24 +0.1 1,904,117 + HP15_1810 0.24 -0.2 1,904,125 - HP15_1810 0.25 +0.5 1,904,125 - HP15_1810 0.25 +0.4 1,904,125 - HP15_1810 0.25 +1.2 1,904,310 + HP15_1810 0.36 -0.2 1,904,342 - HP15_1810 0.38 -0.1 1,904,369 + HP15_1810 0.40 -0.0 1,904,464 - HP15_1810 0.46 -0.7 1,904,482 - HP15_1810 0.47 -0.1
Or see this region's nucleotide sequence