Strain Fitness in Marinobacter adhaerens HP15 around HP15_1611

Experiment: monoculture; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1609 and HP15_1610 are separated by 3 nucleotidesHP15_1610 and HP15_1611 are separated by 56 nucleotidesHP15_1611 and HP15_1612 are separated by 26 nucleotides HP15_1609: HP15_1609 - general secretion pathway protein L, at 1,704,817 to 1,706,121 _1609 HP15_1610: HP15_1610 - general secretion pathway protein M, at 1,706,125 to 1,706,655 _1610 HP15_1611: HP15_1611 - GCN5-related N-acetyltransferase, at 1,706,712 to 1,707,383 _1611 HP15_1612: HP15_1612 - protein containing FAD-dependent pyridine nucleotide-disulfide oxidoreductase / Pyridine nucleotide-disulfide oxidoreductase, dimerization, at 1,707,410 to 1,708,771 _1612 Position (kb) 1706 1707 1708Strain fitness (log2 ratio) -2 -1 0 1at 1706.018 kb on - strandat 1706.215 kb on + strand, within HP15_1610at 1706.531 kb on + strand, within HP15_1610at 1706.596 kb on + strand, within HP15_1610at 1706.604 kb on - strandat 1706.799 kb on - strand, within HP15_1611at 1707.033 kb on + strand, within HP15_1611at 1707.053 kb on - strand, within HP15_1611at 1707.053 kb on - strand, within HP15_1611at 1707.486 kb on - strandat 1707.515 kb on + strandat 1707.651 kb on + strand, within HP15_1612at 1707.944 kb on + strand, within HP15_1612at 1707.952 kb on - strand, within HP15_1612at 1707.981 kb on + strand, within HP15_1612at 1708.148 kb on + strand, within HP15_1612at 1708.173 kb on + strand, within HP15_1612at 1708.229 kb on - strand, within HP15_1612at 1708.229 kb on - strand, within HP15_1612at 1708.285 kb on + strand, within HP15_1612at 1708.321 kb on - strand, within HP15_1612at 1708.356 kb on + strand, within HP15_1612at 1708.366 kb on + strand, within HP15_1612at 1708.381 kb on - strand, within HP15_1612

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
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1,706,018 - -0.8
1,706,215 + HP15_1610 0.17 -1.3
1,706,531 + HP15_1610 0.76 -1.6
1,706,596 + HP15_1610 0.89 -2.0
1,706,604 - -1.1
1,706,799 - HP15_1611 0.13 +0.3
1,707,033 + HP15_1611 0.48 -0.1
1,707,053 - HP15_1611 0.51 -0.2
1,707,053 - HP15_1611 0.51 +0.5
1,707,486 - +0.6
1,707,515 + -1.0
1,707,651 + HP15_1612 0.18 +0.6
1,707,944 + HP15_1612 0.39 +0.0
1,707,952 - HP15_1612 0.40 -1.1
1,707,981 + HP15_1612 0.42 -0.4
1,708,148 + HP15_1612 0.54 +1.4
1,708,173 + HP15_1612 0.56 -0.1
1,708,229 - HP15_1612 0.60 +0.6
1,708,229 - HP15_1612 0.60 -0.3
1,708,285 + HP15_1612 0.64 -0.0
1,708,321 - HP15_1612 0.67 -1.2
1,708,356 + HP15_1612 0.69 -0.3
1,708,366 + HP15_1612 0.70 -0.8
1,708,381 - HP15_1612 0.71 -0.9

Or see this region's nucleotide sequence