Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1355 and HP15_1356 overlap by 4 nucleotides HP15_1356 and HP15_1357 are separated by 40 nucleotides
HP15_1355: HP15_1355 - cell division protein FtsH, at 1,424,465 to 1,426,378
_1355
HP15_1356: HP15_1356 - conserved hypothetical protein, at 1,426,375 to 1,426,623
_1356
HP15_1357: HP15_1357 - gamma-glutamyltranspeptidase periplasmic precursor, at 1,426,664 to 1,428,427
_1357
Position (kb)
1426
1427 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1425.483 kb on - strand, within HP15_1355 at 1425.483 kb on - strand, within HP15_1355 at 1425.584 kb on - strand, within HP15_1355 at 1425.667 kb on - strand, within HP15_1355 at 1425.667 kb on - strand, within HP15_1355 at 1425.672 kb on - strand, within HP15_1355 at 1425.692 kb on + strand, within HP15_1355 at 1425.836 kb on - strand, within HP15_1355 at 1425.909 kb on + strand, within HP15_1355 at 1425.975 kb on + strand, within HP15_1355 at 1425.980 kb on + strand, within HP15_1355 at 1425.993 kb on - strand, within HP15_1355 at 1426.421 kb on + strand, within HP15_1356 at 1426.469 kb on + strand, within HP15_1356 at 1426.469 kb on + strand, within HP15_1356 at 1426.477 kb on - strand, within HP15_1356 at 1426.524 kb on + strand, within HP15_1356 at 1426.532 kb on - strand, within HP15_1356 at 1426.534 kb on + strand, within HP15_1356 at 1426.534 kb on + strand, within HP15_1356 at 1426.547 kb on - strand, within HP15_1356 at 1427.089 kb on - strand, within HP15_1357 at 1427.181 kb on + strand, within HP15_1357 at 1427.189 kb on - strand, within HP15_1357 at 1427.195 kb on - strand, within HP15_1357 at 1427.208 kb on + strand, within HP15_1357 at 1427.216 kb on - strand, within HP15_1357 at 1427.236 kb on + strand, within HP15_1357 at 1427.244 kb on - strand, within HP15_1357 at 1427.287 kb on + strand, within HP15_1357 at 1427.287 kb on + strand, within HP15_1357 at 1427.397 kb on - strand, within HP15_1357 at 1427.406 kb on - strand, within HP15_1357 at 1427.414 kb on + strand, within HP15_1357 at 1427.525 kb on + strand, within HP15_1357 at 1427.609 kb on + strand, within HP15_1357
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 1,425,483 - HP15_1355 0.53 -0.8 1,425,483 - HP15_1355 0.53 +1.8 1,425,584 - HP15_1355 0.58 +1.0 1,425,667 - HP15_1355 0.63 +0.7 1,425,667 - HP15_1355 0.63 +0.6 1,425,672 - HP15_1355 0.63 +1.5 1,425,692 + HP15_1355 0.64 +0.9 1,425,836 - HP15_1355 0.72 +0.7 1,425,909 + HP15_1355 0.75 -1.2 1,425,975 + HP15_1355 0.79 +0.5 1,425,980 + HP15_1355 0.79 -0.1 1,425,993 - HP15_1355 0.80 +0.6 1,426,421 + HP15_1356 0.18 -0.6 1,426,469 + HP15_1356 0.38 -0.6 1,426,469 + HP15_1356 0.38 -1.1 1,426,477 - HP15_1356 0.41 -0.1 1,426,524 + HP15_1356 0.60 +0.3 1,426,532 - HP15_1356 0.63 +0.8 1,426,534 + HP15_1356 0.64 -2.9 1,426,534 + HP15_1356 0.64 -0.1 1,426,547 - HP15_1356 0.69 +0.8 1,427,089 - HP15_1357 0.24 +0.1 1,427,181 + HP15_1357 0.29 +0.7 1,427,189 - HP15_1357 0.30 -0.1 1,427,195 - HP15_1357 0.30 -1.4 1,427,208 + HP15_1357 0.31 +0.2 1,427,216 - HP15_1357 0.31 +0.3 1,427,236 + HP15_1357 0.32 -0.3 1,427,244 - HP15_1357 0.33 -1.0 1,427,287 + HP15_1357 0.35 +0.1 1,427,287 + HP15_1357 0.35 +0.5 1,427,397 - HP15_1357 0.42 +0.2 1,427,406 - HP15_1357 0.42 +0.1 1,427,414 + HP15_1357 0.43 -0.4 1,427,525 + HP15_1357 0.49 +0.6 1,427,609 + HP15_1357 0.54 +0.2
Or see this region's nucleotide sequence