Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_868 and HP15_869 are separated by 88 nucleotides HP15_869 and HP15_870 are separated by 99 nucleotides HP15_870 and HP15_871 are separated by 20 nucleotides HP15_871 and HP15_872 are separated by 60 nucleotides
HP15_868: HP15_868 - transcriptional regulator, LysR family, at 888,296 to 889,177
_868
HP15_869: HP15_869 - lysine exporter protein (LYSE/YGGA), at 889,266 to 889,871
_869
HP15_870: HP15_870 - conserved hypothetical protein, membrane, at 889,971 to 890,444
_870
HP15_871: HP15_871 - NLP/P60 family protein, at 890,465 to 891,079
_871
HP15_872: HP15_872 - nitroreductase-like protein, at 891,140 to 892,168
_872
Position (kb) 889
890
891 Strain fitness (log2 ratio) -1
0
1
2 at 889.015 kb on - strand, within HP15_868 at 889.134 kb on - strand at 889.135 kb on + strand at 889.152 kb on - strand at 889.288 kb on + strand at 889.399 kb on - strand, within HP15_869 at 889.413 kb on - strand, within HP15_869 at 889.414 kb on + strand, within HP15_869 at 889.449 kb on - strand, within HP15_869 at 889.449 kb on - strand, within HP15_869 at 889.601 kb on + strand, within HP15_869 at 889.601 kb on + strand, within HP15_869 at 889.723 kb on - strand, within HP15_869 at 889.735 kb on + strand, within HP15_869 at 889.743 kb on - strand, within HP15_869 at 889.837 kb on + strand at 889.955 kb on - strand at 890.040 kb on + strand, within HP15_870 at 890.060 kb on - strand, within HP15_870 at 890.139 kb on + strand, within HP15_870 at 890.155 kb on - strand, within HP15_870 at 890.250 kb on + strand, within HP15_870 at 890.451 kb on - strand at 890.564 kb on + strand, within HP15_871 at 890.669 kb on - strand, within HP15_871 at 890.707 kb on + strand, within HP15_871 at 890.744 kb on + strand, within HP15_871 at 890.835 kb on - strand, within HP15_871 at 890.858 kb on + strand, within HP15_871 at 890.955 kb on + strand, within HP15_871 at 890.965 kb on + strand, within HP15_871 at 890.973 kb on - strand, within HP15_871 at 891.103 kb on + strand at 891.132 kb on - strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.238 kb on - strand at 891.393 kb on - strand, within HP15_872 at 891.431 kb on - strand, within HP15_872
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3 remove 889,015 - HP15_868 0.82 -0.6 889,134 - -0.1 889,135 + +0.9 889,152 - +0.6 889,288 + +0.0 889,399 - HP15_869 0.22 +1.1 889,413 - HP15_869 0.24 -0.8 889,414 + HP15_869 0.24 -0.4 889,449 - HP15_869 0.30 -1.7 889,449 - HP15_869 0.30 -0.1 889,601 + HP15_869 0.55 +0.7 889,601 + HP15_869 0.55 -0.3 889,723 - HP15_869 0.75 -0.6 889,735 + HP15_869 0.77 +0.6 889,743 - HP15_869 0.79 +0.5 889,837 + -0.3 889,955 - +1.4 890,040 + HP15_870 0.15 +0.2 890,060 - HP15_870 0.19 +0.1 890,139 + HP15_870 0.35 -1.6 890,155 - HP15_870 0.39 -0.2 890,250 + HP15_870 0.59 +0.0 890,451 - -1.6 890,564 + HP15_871 0.16 +2.0 890,669 - HP15_871 0.33 -0.2 890,707 + HP15_871 0.39 +0.5 890,744 + HP15_871 0.45 -0.3 890,835 - HP15_871 0.60 -0.5 890,858 + HP15_871 0.64 -1.0 890,955 + HP15_871 0.80 -0.0 890,965 + HP15_871 0.81 -0.8 890,973 - HP15_871 0.83 -0.5 891,103 + -0.6 891,132 - +0.1 891,162 + +1.8 891,162 + -0.3 891,238 - +0.3 891,393 - HP15_872 0.25 -0.6 891,431 - HP15_872 0.28 -1.3
Or see this region's nucleotide sequence