Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_703 and HP15_tRNA14 are separated by 21 nucleotides HP15_tRNA14 and HP15_704 are separated by 92 nucleotides HP15_704 and HP15_705 are separated by 37 nucleotides HP15_705 and HP15_706 are separated by 30 nucleotides
HP15_703: HP15_703 - phage integrase, at 711,588 to 712,454
_703
HP15_tRNA14: HP15_tRNA14 - tRNA-Met, at 712,476 to 712,552
_tRNA14
HP15_704: HP15_704 - translation-associated GTPase, at 712,645 to 713,736
_704
HP15_705: HP15_705 - peptidyl-tRNA hydrolase, at 713,774 to 714,361
_705
HP15_706: HP15_706 - ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5, at 714,392 to 715,063
_706
Position (kb) 712
713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 711.854 kb on - strand, within HP15_703 at 711.856 kb on + strand, within HP15_703 at 711.861 kb on + strand, within HP15_703 at 711.861 kb on + strand, within HP15_703 at 711.874 kb on - strand, within HP15_703 at 711.904 kb on - strand, within HP15_703 at 712.064 kb on + strand, within HP15_703 at 712.177 kb on + strand, within HP15_703 at 712.180 kb on - strand, within HP15_703 at 712.180 kb on - strand, within HP15_703 at 712.240 kb on + strand, within HP15_703 at 712.300 kb on + strand, within HP15_703 at 712.334 kb on + strand, within HP15_703 at 712.342 kb on - strand, within HP15_703 at 712.617 kb on + strand at 713.172 kb on - strand, within HP15_704 at 713.366 kb on - strand, within HP15_704 at 713.384 kb on - strand, within HP15_704 at 713.384 kb on - strand, within HP15_704 at 713.412 kb on + strand, within HP15_704 at 713.675 kb on + strand at 713.772 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3 remove 711,854 - HP15_703 0.31 +0.8 711,856 + HP15_703 0.31 +0.3 711,861 + HP15_703 0.31 -0.4 711,861 + HP15_703 0.31 -0.8 711,874 - HP15_703 0.33 -0.3 711,904 - HP15_703 0.36 +0.1 712,064 + HP15_703 0.55 +0.8 712,177 + HP15_703 0.68 -0.1 712,180 - HP15_703 0.68 +0.6 712,180 - HP15_703 0.68 +0.1 712,240 + HP15_703 0.75 +0.8 712,300 + HP15_703 0.82 -0.3 712,334 + HP15_703 0.86 -1.0 712,342 - HP15_703 0.87 +1.0 712,617 + -0.4 713,172 - HP15_704 0.48 -2.9 713,366 - HP15_704 0.66 -0.1 713,384 - HP15_704 0.68 -1.1 713,384 - HP15_704 0.68 +0.1 713,412 + HP15_704 0.70 -2.6 713,675 + -0.1 713,772 + -1.5
Or see this region's nucleotide sequence