Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_697 and HP15_698 overlap by 1 nucleotides HP15_698 and HP15_699 are separated by 59 nucleotides HP15_699 and HP15_700 are separated by 2 nucleotides HP15_700 and HP15_701 overlap by 4 nucleotides HP15_701 and HP15_702 are separated by 273 nucleotides
HP15_697: HP15_697 - conserved hypothetical protein, at 707,871 to 708,542
_697
HP15_698: HP15_698 - conserved hypothetical protein, at 708,542 to 708,838
_698
HP15_699: HP15_699 - conserved hypothetical protein, at 708,898 to 710,031
_699
HP15_700: HP15_700 - hypothetical protein, at 710,034 to 710,192
_700
HP15_701: HP15_701 - hypothetical protein, at 710,189 to 710,449
_701
HP15_702: HP15_702 - conserved hypothetical protein, at 710,723 to 711,118
_702
Position (kb) 708
709
710
711 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 707.979 kb on - strand, within HP15_697 at 708.037 kb on - strand, within HP15_697 at 708.116 kb on - strand, within HP15_697 at 708.165 kb on + strand, within HP15_697 at 708.241 kb on + strand, within HP15_697 at 708.402 kb on - strand, within HP15_697 at 708.434 kb on - strand, within HP15_697 at 708.489 kb on - strand at 708.825 kb on - strand at 708.827 kb on + strand at 708.827 kb on + strand at 708.827 kb on + strand at 708.835 kb on - strand at 708.835 kb on - strand at 708.947 kb on - strand at 708.947 kb on - strand at 708.947 kb on - strand at 708.949 kb on + strand at 709.085 kb on + strand, within HP15_699 at 709.170 kb on + strand, within HP15_699 at 709.197 kb on + strand, within HP15_699 at 709.205 kb on - strand, within HP15_699 at 709.409 kb on - strand, within HP15_699 at 709.495 kb on - strand, within HP15_699 at 709.505 kb on + strand, within HP15_699 at 709.513 kb on - strand, within HP15_699 at 709.513 kb on - strand, within HP15_699 at 709.520 kb on + strand, within HP15_699 at 709.590 kb on + strand, within HP15_699 at 709.636 kb on - strand, within HP15_699 at 709.639 kb on + strand, within HP15_699 at 709.639 kb on + strand, within HP15_699 at 709.663 kb on + strand, within HP15_699 at 709.793 kb on - strand, within HP15_699 at 709.858 kb on + strand, within HP15_699 at 709.866 kb on - strand, within HP15_699 at 709.895 kb on - strand, within HP15_699 at 709.919 kb on - strand at 709.924 kb on - strand at 709.969 kb on + strand at 709.994 kb on - strand at 710.059 kb on + strand, within HP15_700 at 710.193 kb on + strand at 710.201 kb on - strand at 710.269 kb on - strand, within HP15_701 at 710.435 kb on - strand at 710.524 kb on + strand at 710.532 kb on - strand at 710.753 kb on - strand at 710.755 kb on + strand at 710.939 kb on - strand, within HP15_702 at 710.949 kb on - strand, within HP15_702 at 710.956 kb on - strand, within HP15_702 at 710.956 kb on - strand, within HP15_702 at 710.980 kb on + strand, within HP15_702 at 710.995 kb on - strand, within HP15_702 at 711.019 kb on - strand, within HP15_702
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3 remove 707,979 - HP15_697 0.16 -1.7 708,037 - HP15_697 0.25 +0.8 708,116 - HP15_697 0.36 +0.1 708,165 + HP15_697 0.44 -2.6 708,241 + HP15_697 0.55 -4.3 708,402 - HP15_697 0.79 -0.0 708,434 - HP15_697 0.84 +0.6 708,489 - -2.1 708,825 - -0.7 708,827 + -3.1 708,827 + -2.4 708,827 + -0.9 708,835 - +0.5 708,835 - +0.2 708,947 - -0.1 708,947 - +0.6 708,947 - +0.7 708,949 + -1.0 709,085 + HP15_699 0.16 -0.4 709,170 + HP15_699 0.24 -0.5 709,197 + HP15_699 0.26 -1.3 709,205 - HP15_699 0.27 +0.5 709,409 - HP15_699 0.45 -0.4 709,495 - HP15_699 0.53 +0.3 709,505 + HP15_699 0.54 -2.9 709,513 - HP15_699 0.54 +0.2 709,513 - HP15_699 0.54 -0.8 709,520 + HP15_699 0.55 -2.4 709,590 + HP15_699 0.61 -1.7 709,636 - HP15_699 0.65 -0.3 709,639 + HP15_699 0.65 -1.7 709,639 + HP15_699 0.65 -1.4 709,663 + HP15_699 0.67 -2.7 709,793 - HP15_699 0.79 -0.5 709,858 + HP15_699 0.85 -3.9 709,866 - HP15_699 0.85 +0.1 709,895 - HP15_699 0.88 -0.6 709,919 - -0.4 709,924 - +0.1 709,969 + -4.6 709,994 - +0.1 710,059 + HP15_700 0.16 -0.3 710,193 + -3.4 710,201 - +0.8 710,269 - HP15_701 0.31 -0.5 710,435 - +0.3 710,524 + -1.9 710,532 - +0.6 710,753 - -0.4 710,755 + -3.1 710,939 - HP15_702 0.55 -0.6 710,949 - HP15_702 0.57 +0.0 710,956 - HP15_702 0.59 +0.3 710,956 - HP15_702 0.59 -0.5 710,980 + HP15_702 0.65 -1.9 710,995 - HP15_702 0.69 -1.3 711,019 - HP15_702 0.75 +0.6
Or see this region's nucleotide sequence