Strain Fitness in Marinobacter adhaerens HP15 around HP15_3968

Experiment: monoculture; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3967 and HP15_3968 overlap by 4 nucleotidesHP15_3968 and HP15_3969 are separated by 31 nucleotides HP15_3967: HP15_3967 - integral membrane sensor signal transduction histidine kinase, at 4,196,290 to 4,197,702 _3967 HP15_3968: HP15_3968 - two component transcriptional regulator, winged helix family, at 4,197,699 to 4,198,373 _3968 HP15_3969: HP15_3969 - glycosyl transferase, family 39, at 4,198,405 to 4,199,952 _3969 Position (kb) 4197 4198 4199Strain fitness (log2 ratio) -2 -1 0 1at 4196.731 kb on + strand, within HP15_3967at 4196.739 kb on - strand, within HP15_3967at 4196.865 kb on + strand, within HP15_3967at 4196.868 kb on - strand, within HP15_3967at 4196.917 kb on - strand, within HP15_3967at 4197.018 kb on - strand, within HP15_3967at 4197.044 kb on - strand, within HP15_3967at 4197.140 kb on + strand, within HP15_3967at 4197.140 kb on + strand, within HP15_3967at 4197.172 kb on + strand, within HP15_3967at 4197.270 kb on + strand, within HP15_3967at 4197.272 kb on - strand, within HP15_3967at 4197.278 kb on - strand, within HP15_3967at 4197.399 kb on + strand, within HP15_3967at 4197.455 kb on - strand, within HP15_3967at 4197.470 kb on - strand, within HP15_3967at 4197.474 kb on - strand, within HP15_3967at 4197.506 kb on - strand, within HP15_3967at 4197.545 kb on + strand, within HP15_3967at 4197.552 kb on - strand, within HP15_3967at 4197.555 kb on + strand, within HP15_3967at 4197.574 kb on + strandat 4197.716 kb on + strandat 4197.724 kb on + strandat 4197.809 kb on + strand, within HP15_3968at 4197.809 kb on + strand, within HP15_3968at 4197.809 kb on + strand, within HP15_3968at 4197.817 kb on - strand, within HP15_3968at 4197.817 kb on - strand, within HP15_3968at 4197.817 kb on - strand, within HP15_3968at 4197.823 kb on - strand, within HP15_3968at 4197.844 kb on - strand, within HP15_3968at 4197.852 kb on - strand, within HP15_3968at 4197.884 kb on + strand, within HP15_3968at 4197.901 kb on + strand, within HP15_3968at 4197.998 kb on + strand, within HP15_3968at 4198.006 kb on - strand, within HP15_3968at 4198.114 kb on - strand, within HP15_3968at 4198.226 kb on - strand, within HP15_3968at 4198.257 kb on + strand, within HP15_3968at 4198.281 kb on - strand, within HP15_3968at 4198.316 kb on - strandat 4198.347 kb on - strandat 4198.567 kb on - strand, within HP15_3969at 4198.608 kb on + strand, within HP15_3969at 4198.701 kb on - strand, within HP15_3969at 4198.707 kb on - strand, within HP15_3969at 4198.708 kb on - strand, within HP15_3969at 4198.775 kb on + strand, within HP15_3969at 4198.797 kb on + strand, within HP15_3969at 4198.805 kb on - strand, within HP15_3969at 4198.850 kb on + strand, within HP15_3969at 4198.862 kb on - strand, within HP15_3969at 4198.898 kb on - strand, within HP15_3969at 4198.977 kb on + strand, within HP15_3969at 4199.004 kb on - strand, within HP15_3969at 4199.132 kb on - strand, within HP15_3969at 4199.153 kb on - strand, within HP15_3969at 4199.246 kb on + strand, within HP15_3969at 4199.246 kb on + strand, within HP15_3969at 4199.274 kb on - strand, within HP15_3969

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3
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4,196,731 + HP15_3967 0.31 +1.2
4,196,739 - HP15_3967 0.32 +0.1
4,196,865 + HP15_3967 0.41 +0.6
4,196,868 - HP15_3967 0.41 +1.2
4,196,917 - HP15_3967 0.44 +0.1
4,197,018 - HP15_3967 0.52 -0.2
4,197,044 - HP15_3967 0.53 +0.2
4,197,140 + HP15_3967 0.60 -0.3
4,197,140 + HP15_3967 0.60 +0.0
4,197,172 + HP15_3967 0.62 +0.5
4,197,270 + HP15_3967 0.69 -0.2
4,197,272 - HP15_3967 0.69 +0.3
4,197,278 - HP15_3967 0.70 -1.6
4,197,399 + HP15_3967 0.78 +0.9
4,197,455 - HP15_3967 0.82 -0.5
4,197,470 - HP15_3967 0.84 -0.6
4,197,474 - HP15_3967 0.84 -2.0
4,197,506 - HP15_3967 0.86 +0.2
4,197,545 + HP15_3967 0.89 -0.2
4,197,552 - HP15_3967 0.89 -0.4
4,197,555 + HP15_3967 0.90 -0.3
4,197,574 + -0.5
4,197,716 + -0.2
4,197,724 + +0.2
4,197,809 + HP15_3968 0.16 +0.7
4,197,809 + HP15_3968 0.16 +0.4
4,197,809 + HP15_3968 0.16 -0.9
4,197,817 - HP15_3968 0.17 -0.3
4,197,817 - HP15_3968 0.17 +1.3
4,197,817 - HP15_3968 0.17 -0.2
4,197,823 - HP15_3968 0.18 +0.5
4,197,844 - HP15_3968 0.21 +0.9
4,197,852 - HP15_3968 0.23 -0.1
4,197,884 + HP15_3968 0.27 +0.2
4,197,901 + HP15_3968 0.30 -0.2
4,197,998 + HP15_3968 0.44 +0.8
4,198,006 - HP15_3968 0.45 -0.7
4,198,114 - HP15_3968 0.61 -1.0
4,198,226 - HP15_3968 0.78 +0.2
4,198,257 + HP15_3968 0.83 -1.6
4,198,281 - HP15_3968 0.86 +0.6
4,198,316 - +0.3
4,198,347 - +0.6
4,198,567 - HP15_3969 0.10 -0.1
4,198,608 + HP15_3969 0.13 +0.6
4,198,701 - HP15_3969 0.19 -0.9
4,198,707 - HP15_3969 0.20 -1.5
4,198,708 - HP15_3969 0.20 +0.6
4,198,775 + HP15_3969 0.24 +1.0
4,198,797 + HP15_3969 0.25 +0.1
4,198,805 - HP15_3969 0.26 -1.2
4,198,850 + HP15_3969 0.29 -1.1
4,198,862 - HP15_3969 0.30 -0.6
4,198,898 - HP15_3969 0.32 -0.5
4,198,977 + HP15_3969 0.37 +0.0
4,199,004 - HP15_3969 0.39 +0.5
4,199,132 - HP15_3969 0.47 -1.1
4,199,153 - HP15_3969 0.48 -0.0
4,199,246 + HP15_3969 0.54 -0.7
4,199,246 + HP15_3969 0.54 +0.6
4,199,274 - HP15_3969 0.56 +0.4

Or see this region's nucleotide sequence