Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3309 and HP15_3310 are separated by 135 nucleotides HP15_3310 and HP15_3311 are separated by 5 nucleotides HP15_3311 and HP15_3312 are separated by 18 nucleotides
HP15_3309: HP15_3309 - S-adenosylmethionine decarboxylase proenzyme, at 3,466,052 to 3,466,846
_3309
HP15_3310: HP15_3310 - pirin family protein, at 3,466,982 to 3,467,830
_3310
HP15_3311: HP15_3311 - phosphoribulokinase, at 3,467,836 to 3,468,702
_3311
HP15_3312: HP15_3312 - diguanylate cyclase/phosphodiesterase, at 3,468,721 to 3,472,482
_3312
Position (kb)
3466
3467
3468 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3465.986 kb on + strand at 3466.011 kb on + strand at 3466.011 kb on + strand at 3466.011 kb on + strand at 3466.121 kb on - strand at 3466.137 kb on + strand, within HP15_3309 at 3466.187 kb on + strand, within HP15_3309 at 3466.200 kb on + strand, within HP15_3309 at 3466.241 kb on - strand, within HP15_3309 at 3466.256 kb on + strand, within HP15_3309 at 3466.318 kb on - strand, within HP15_3309 at 3466.411 kb on - strand, within HP15_3309 at 3466.473 kb on + strand, within HP15_3309 at 3466.473 kb on + strand, within HP15_3309 at 3466.481 kb on - strand, within HP15_3309 at 3466.599 kb on - strand, within HP15_3309 at 3466.670 kb on - strand, within HP15_3309 at 3466.701 kb on - strand, within HP15_3309 at 3466.963 kb on - strand at 3466.965 kb on + strand at 3466.980 kb on + strand at 3467.003 kb on - strand at 3467.077 kb on - strand, within HP15_3310 at 3467.110 kb on + strand, within HP15_3310 at 3467.170 kb on - strand, within HP15_3310 at 3467.297 kb on - strand, within HP15_3310 at 3467.468 kb on + strand, within HP15_3310 at 3467.481 kb on - strand, within HP15_3310 at 3467.547 kb on + strand, within HP15_3310 at 3467.587 kb on - strand, within HP15_3310 at 3467.593 kb on + strand, within HP15_3310 at 3467.604 kb on + strand, within HP15_3310 at 3467.780 kb on + strand at 3467.988 kb on + strand, within HP15_3311 at 3467.991 kb on - strand, within HP15_3311 at 3468.068 kb on - strand, within HP15_3311 at 3468.251 kb on + strand, within HP15_3311 at 3468.305 kb on - strand, within HP15_3311 at 3468.386 kb on + strand, within HP15_3311 at 3468.521 kb on + strand, within HP15_3311 at 3468.552 kb on - strand, within HP15_3311 at 3468.589 kb on - strand, within HP15_3311 at 3468.596 kb on - strand, within HP15_3311 at 3468.603 kb on + strand, within HP15_3311 at 3468.733 kb on + strand at 3468.771 kb on - strand at 3468.797 kb on - strand at 3468.807 kb on - strand at 3468.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3 remove 3,465,986 + +0.2 3,466,011 + +0.6 3,466,011 + +0.3 3,466,011 + +0.4 3,466,121 - -1.6 3,466,137 + HP15_3309 0.11 +1.0 3,466,187 + HP15_3309 0.17 +1.1 3,466,200 + HP15_3309 0.19 +3.1 3,466,241 - HP15_3309 0.24 +1.3 3,466,256 + HP15_3309 0.26 +0.2 3,466,318 - HP15_3309 0.33 +1.1 3,466,411 - HP15_3309 0.45 +0.3 3,466,473 + HP15_3309 0.53 +0.1 3,466,473 + HP15_3309 0.53 +0.8 3,466,481 - HP15_3309 0.54 +0.8 3,466,599 - HP15_3309 0.69 +1.0 3,466,670 - HP15_3309 0.78 +0.3 3,466,701 - HP15_3309 0.82 +1.7 3,466,963 - +1.1 3,466,965 + -0.4 3,466,980 + -0.1 3,467,003 - -0.1 3,467,077 - HP15_3310 0.11 +0.3 3,467,110 + HP15_3310 0.15 -1.2 3,467,170 - HP15_3310 0.22 -0.2 3,467,297 - HP15_3310 0.37 -1.3 3,467,468 + HP15_3310 0.57 +1.4 3,467,481 - HP15_3310 0.59 +1.0 3,467,547 + HP15_3310 0.67 -0.3 3,467,587 - HP15_3310 0.71 -0.3 3,467,593 + HP15_3310 0.72 +0.5 3,467,604 + HP15_3310 0.73 +0.7 3,467,780 + +0.1 3,467,988 + HP15_3311 0.18 +0.4 3,467,991 - HP15_3311 0.18 -0.9 3,468,068 - HP15_3311 0.27 +0.3 3,468,251 + HP15_3311 0.48 -1.3 3,468,305 - HP15_3311 0.54 +1.5 3,468,386 + HP15_3311 0.63 +0.7 3,468,521 + HP15_3311 0.79 +0.6 3,468,552 - HP15_3311 0.83 +0.6 3,468,589 - HP15_3311 0.87 +1.1 3,468,596 - HP15_3311 0.88 +0.3 3,468,603 + HP15_3311 0.88 +0.6 3,468,733 + +0.2 3,468,771 - +0.7 3,468,797 - -0.2 3,468,807 - +0.4 3,468,822 - +1.5
Or see this region's nucleotide sequence