Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_305 and HP15_306 are separated by 78 nucleotides HP15_306 and HP15_307 are separated by 61 nucleotides
HP15_305: HP15_305 - guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 294,961 to 297,102
_305
HP15_306: HP15_306 - YjgF-like protein, at 297,181 to 297,567
_306
HP15_307: HP15_307 - NAD-dependent epimerase/dehydratase, at 297,629 to 298,495
_307
Position (kb) 297
298 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 296.603 kb on + strand, within HP15_305 at 296.603 kb on + strand, within HP15_305 at 296.603 kb on + strand, within HP15_305 at 296.797 kb on - strand, within HP15_305 at 296.877 kb on + strand, within HP15_305 at 296.877 kb on + strand, within HP15_305 at 297.010 kb on + strand at 297.044 kb on - strand at 297.265 kb on - strand, within HP15_306 at 297.357 kb on + strand, within HP15_306 at 297.365 kb on - strand, within HP15_306 at 297.365 kb on - strand, within HP15_306 at 297.365 kb on - strand, within HP15_306 at 297.365 kb on - strand, within HP15_306 at 297.365 kb on - strand, within HP15_306 at 297.365 kb on - strand, within HP15_306 at 297.365 kb on - strand, within HP15_306 at 297.430 kb on - strand, within HP15_306 at 297.488 kb on - strand, within HP15_306 at 297.519 kb on + strand, within HP15_306 at 297.519 kb on + strand, within HP15_306 at 297.519 kb on + strand, within HP15_306 at 297.519 kb on + strand, within HP15_306 at 297.519 kb on + strand, within HP15_306 at 297.527 kb on - strand, within HP15_306 at 297.527 kb on - strand, within HP15_306 at 297.527 kb on - strand, within HP15_306 at 297.527 kb on - strand, within HP15_306 at 297.527 kb on - strand, within HP15_306 at 297.627 kb on + strand at 297.698 kb on + strand at 297.805 kb on + strand, within HP15_307 at 297.813 kb on - strand, within HP15_307 at 297.845 kb on + strand, within HP15_307 at 297.850 kb on + strand, within HP15_307 at 297.906 kb on - strand, within HP15_307 at 297.908 kb on + strand, within HP15_307 at 297.934 kb on + strand, within HP15_307 at 297.964 kb on + strand, within HP15_307 at 298.080 kb on + strand, within HP15_307 at 298.221 kb on + strand, within HP15_307 at 298.231 kb on - strand, within HP15_307 at 298.241 kb on + strand, within HP15_307 at 298.256 kb on + strand, within HP15_307 at 298.304 kb on - strand, within HP15_307 at 298.333 kb on + strand, within HP15_307 at 298.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3 remove 296,603 + HP15_305 0.77 +0.0 296,603 + HP15_305 0.77 +0.8 296,603 + HP15_305 0.77 +0.4 296,797 - HP15_305 0.86 -1.2 296,877 + HP15_305 0.89 -1.5 296,877 + HP15_305 0.89 +0.5 297,010 + -1.2 297,044 - -2.3 297,265 - HP15_306 0.22 -1.1 297,357 + HP15_306 0.45 -3.6 297,365 - HP15_306 0.48 -5.2 297,365 - HP15_306 0.48 -2.4 297,365 - HP15_306 0.48 -2.2 297,365 - HP15_306 0.48 +0.1 297,365 - HP15_306 0.48 -2.3 297,365 - HP15_306 0.48 -3.6 297,365 - HP15_306 0.48 -2.5 297,430 - HP15_306 0.64 +0.3 297,488 - HP15_306 0.79 -2.8 297,519 + HP15_306 0.87 -3.9 297,519 + HP15_306 0.87 -2.8 297,519 + HP15_306 0.87 -1.8 297,519 + HP15_306 0.87 -2.1 297,519 + HP15_306 0.87 -5.1 297,527 - HP15_306 0.89 -2.3 297,527 - HP15_306 0.89 -3.3 297,527 - HP15_306 0.89 -2.8 297,527 - HP15_306 0.89 -2.1 297,527 - HP15_306 0.89 -1.6 297,627 + -0.6 297,698 + -3.6 297,805 + HP15_307 0.20 -1.1 297,813 - HP15_307 0.21 -0.2 297,845 + HP15_307 0.25 -0.9 297,850 + HP15_307 0.25 -1.4 297,906 - HP15_307 0.32 -0.5 297,908 + HP15_307 0.32 -0.6 297,934 + HP15_307 0.35 -1.8 297,964 + HP15_307 0.39 -1.2 298,080 + HP15_307 0.52 -0.8 298,221 + HP15_307 0.68 -0.7 298,231 - HP15_307 0.69 -0.7 298,241 + HP15_307 0.71 -1.1 298,256 + HP15_307 0.72 -0.5 298,304 - HP15_307 0.78 -1.0 298,333 + HP15_307 0.81 -1.1 298,479 - -1.1
Or see this region's nucleotide sequence