Strain Fitness in Marinobacter adhaerens HP15 around HP15_2914

Experiment: monoculture; Experiment C, time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2913 and HP15_2914 are separated by 235 nucleotidesHP15_2914 and HP15_2915 are separated by 149 nucleotides HP15_2913: HP15_2913 - bacterial transketolase, at 3,050,685 to 3,052,685 _2913 HP15_2914: HP15_2914 - protein containing Methyltransferase type 11 domain, at 3,052,921 to 3,053,922 _2914 HP15_2915: HP15_2915 - S-adenosylmethionine synthetase, at 3,054,072 to 3,055,262 _2915 Position (kb) 3052 3053 3054Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 3053.019 kb on - strandat 3053.112 kb on + strand, within HP15_2914at 3053.112 kb on + strand, within HP15_2914at 3053.112 kb on + strand, within HP15_2914at 3053.291 kb on + strand, within HP15_2914at 3053.296 kb on + strand, within HP15_2914at 3053.301 kb on + strand, within HP15_2914at 3053.392 kb on + strand, within HP15_2914at 3053.529 kb on + strand, within HP15_2914at 3053.529 kb on + strand, within HP15_2914at 3053.529 kb on + strand, within HP15_2914at 3053.552 kb on - strand, within HP15_2914at 3053.588 kb on - strand, within HP15_2914at 3053.607 kb on + strand, within HP15_2914at 3053.610 kb on - strand, within HP15_2914at 3053.661 kb on + strand, within HP15_2914at 3053.703 kb on - strand, within HP15_2914at 3053.733 kb on + strand, within HP15_2914at 3053.736 kb on + strand, within HP15_2914at 3053.744 kb on - strand, within HP15_2914at 3053.751 kb on + strand, within HP15_2914at 3053.765 kb on - strand, within HP15_2914at 3053.789 kb on + strand, within HP15_2914at 3053.853 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3
remove
3,053,019 - -3.7
3,053,112 + HP15_2914 0.19 +0.2
3,053,112 + HP15_2914 0.19 -1.2
3,053,112 + HP15_2914 0.19 -1.3
3,053,291 + HP15_2914 0.37 +0.7
3,053,296 + HP15_2914 0.37 -0.4
3,053,301 + HP15_2914 0.38 -1.1
3,053,392 + HP15_2914 0.47 -0.2
3,053,529 + HP15_2914 0.61 -0.5
3,053,529 + HP15_2914 0.61 -0.6
3,053,529 + HP15_2914 0.61 -0.4
3,053,552 - HP15_2914 0.63 -1.7
3,053,588 - HP15_2914 0.67 -4.7
3,053,607 + HP15_2914 0.68 +0.6
3,053,610 - HP15_2914 0.69 -7.0
3,053,661 + HP15_2914 0.74 -0.3
3,053,703 - HP15_2914 0.78 -5.6
3,053,733 + HP15_2914 0.81 +0.9
3,053,736 + HP15_2914 0.81 +0.2
3,053,744 - HP15_2914 0.82 -4.8
3,053,751 + HP15_2914 0.83 -1.7
3,053,765 - HP15_2914 0.84 -0.7
3,053,789 + HP15_2914 0.87 +0.9
3,053,853 - -6.7

Or see this region's nucleotide sequence