Strain Fitness in Marinobacter adhaerens HP15 around HP15_2508
Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | monoculture; Experiment C, time point 3 |
---|---|---|---|---|---|
remove | |||||
2,648,144 | + | HP15_2507 | 0.11 | -1.8 | |
2,648,157 | - | HP15_2507 | 0.12 | +1.2 | |
2,649,311 | - | HP15_2508 | 0.29 | +0.7 | |
2,649,339 | - | HP15_2508 | 0.33 | +0.2 | |
2,649,368 | + | HP15_2508 | 0.37 | -0.3 | |
2,649,403 | + | HP15_2508 | 0.41 | +0.6 | |
2,649,474 | - | HP15_2508 | 0.51 | +0.1 | |
2,649,487 | - | HP15_2508 | 0.53 | +0.4 | |
2,649,514 | + | HP15_2508 | 0.56 | +0.3 | |
2,649,577 | + | HP15_2508 | 0.65 | +0.0 | |
2,649,602 | - | HP15_2508 | 0.68 | +0.2 | |
2,649,649 | + | HP15_2508 | 0.75 | -0.9 | |
2,649,667 | + | HP15_2508 | 0.77 | +1.2 | |
2,649,667 | + | HP15_2508 | 0.77 | +0.2 | |
2,649,733 | - | HP15_2508 | 0.86 | +0.7 | |
2,649,830 | + | +0.6 | |||
2,650,068 | + | HP15_2509 | 0.61 | +0.5 | |
2,650,076 | - | HP15_2509 | 0.68 | -1.2 | |
2,650,221 | + | HP15_2510 | 0.16 | -0.4 | |
2,650,284 | + | HP15_2510 | 0.23 | -0.7 | |
2,650,325 | - | HP15_2510 | 0.28 | +1.2 | |
2,650,468 | - | HP15_2510 | 0.45 | +0.0 | |
2,650,556 | - | HP15_2510 | 0.55 | +0.7 | |
2,650,602 | - | HP15_2510 | 0.61 | +0.5 | |
2,650,687 | + | HP15_2510 | 0.71 | +1.7 | |
2,650,809 | + | HP15_2510 | 0.85 | -0.7 | |
2,650,809 | + | HP15_2510 | 0.85 | +1.1 | |
2,650,817 | - | HP15_2510 | 0.86 | -1.3 |
Or see this region's nucleotide sequence