Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1832 and HP15_1833 are separated by 42 nucleotides HP15_1833 and HP15_1834 are separated by 16 nucleotides
HP15_1832: HP15_1832 - 3-isopropylmalate dehydrogenase, at 1,931,640 to 1,932,731
_1832
HP15_1833: HP15_1833 - isopropylmalate isomerase small subunit, at 1,932,774 to 1,933,421
_1833
HP15_1834: HP15_1834 - protein containing 3-isopropylmalate dehydratase, large subunit region domain, at 1,933,438 to 1,934,856
_1834
Position (kb)
1932
1933
1934 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 1931.902 kb on - strand, within HP15_1832 at 1932.029 kb on - strand, within HP15_1832 at 1932.062 kb on + strand, within HP15_1832 at 1932.225 kb on + strand, within HP15_1832 at 1932.233 kb on - strand, within HP15_1832 at 1932.234 kb on + strand, within HP15_1832 at 1932.386 kb on + strand, within HP15_1832 at 1932.421 kb on - strand, within HP15_1832 at 1932.449 kb on - strand, within HP15_1832 at 1932.584 kb on + strand, within HP15_1832 at 1932.711 kb on - strand at 1932.842 kb on - strand, within HP15_1833 at 1933.149 kb on + strand, within HP15_1833 at 1933.182 kb on + strand, within HP15_1833 at 1933.201 kb on + strand, within HP15_1833 at 1933.367 kb on + strand at 1933.423 kb on + strand at 1933.449 kb on - strand at 1933.547 kb on + strand at 1933.568 kb on + strand at 1933.666 kb on + strand, within HP15_1834 at 1933.726 kb on - strand, within HP15_1834 at 1933.873 kb on - strand, within HP15_1834 at 1934.062 kb on + strand, within HP15_1834 at 1934.331 kb on - strand, within HP15_1834
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3 remove 1,931,902 - HP15_1832 0.24 -3.9 1,932,029 - HP15_1832 0.36 -2.1 1,932,062 + HP15_1832 0.39 -4.2 1,932,225 + HP15_1832 0.54 -3.4 1,932,233 - HP15_1832 0.54 -2.4 1,932,234 + HP15_1832 0.54 -3.8 1,932,386 + HP15_1832 0.68 -2.3 1,932,421 - HP15_1832 0.72 -5.7 1,932,449 - HP15_1832 0.74 -1.5 1,932,584 + HP15_1832 0.86 -1.3 1,932,711 - -1.0 1,932,842 - HP15_1833 0.10 -4.4 1,933,149 + HP15_1833 0.58 -5.4 1,933,182 + HP15_1833 0.63 -1.5 1,933,201 + HP15_1833 0.66 -2.5 1,933,367 + -3.3 1,933,423 + -3.2 1,933,449 - -0.5 1,933,547 + -5.2 1,933,568 + -2.0 1,933,666 + HP15_1834 0.16 -4.3 1,933,726 - HP15_1834 0.20 -2.0 1,933,873 - HP15_1834 0.31 -2.3 1,934,062 + HP15_1834 0.44 -7.3 1,934,331 - HP15_1834 0.63 -1.8
Or see this region's nucleotide sequence