Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1829 and HP15_1830 are separated by 107 nucleotides HP15_1830 and HP15_1831 are separated by 314 nucleotides
HP15_1829: HP15_1829 - tRNA pseudouridine synthase A, at 1,925,814 to 1,926,722
_1829
HP15_1830: HP15_1830 - secreted protein containing motility protein FimV, at 1,926,830 to 1,930,078
_1830
HP15_1831: HP15_1831 - aspartate-semialdehyde dehydrogenase, at 1,930,393 to 1,931,475
_1831
Position (kb)
1926
1927
1928
1929
1930
1931 Strain fitness (log2 ratio)
-1
0
1 at 1925.929 kb on - strand, within HP15_1829 at 1926.345 kb on - strand, within HP15_1829 at 1926.435 kb on + strand, within HP15_1829 at 1926.537 kb on + strand, within HP15_1829 at 1926.563 kb on - strand, within HP15_1829 at 1926.850 kb on + strand at 1926.857 kb on + strand at 1926.864 kb on + strand at 1926.918 kb on + strand at 1927.182 kb on + strand, within HP15_1830 at 1927.215 kb on - strand, within HP15_1830 at 1927.242 kb on + strand, within HP15_1830 at 1927.333 kb on + strand, within HP15_1830 at 1927.341 kb on - strand, within HP15_1830 at 1927.483 kb on + strand, within HP15_1830 at 1928.028 kb on + strand, within HP15_1830 at 1928.121 kb on + strand, within HP15_1830 at 1928.282 kb on - strand, within HP15_1830 at 1928.288 kb on - strand, within HP15_1830 at 1928.341 kb on + strand, within HP15_1830 at 1928.561 kb on - strand, within HP15_1830 at 1928.685 kb on - strand, within HP15_1830 at 1928.700 kb on + strand, within HP15_1830 at 1928.869 kb on + strand, within HP15_1830 at 1929.072 kb on + strand, within HP15_1830 at 1929.272 kb on - strand, within HP15_1830 at 1929.346 kb on + strand, within HP15_1830 at 1929.365 kb on + strand, within HP15_1830 at 1929.510 kb on - strand, within HP15_1830 at 1929.572 kb on - strand, within HP15_1830 at 1929.645 kb on + strand, within HP15_1830 at 1929.645 kb on - strand, within HP15_1830 at 1929.645 kb on - strand, within HP15_1830 at 1929.770 kb on + strand at 1929.786 kb on - strand at 1930.003 kb on + strand at 1930.003 kb on + strand at 1930.003 kb on + strand at 1930.005 kb on + strand at 1930.240 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3 remove 1,925,929 - HP15_1829 0.13 +0.1 1,926,345 - HP15_1829 0.58 +1.0 1,926,435 + HP15_1829 0.68 +1.3 1,926,537 + HP15_1829 0.80 +0.5 1,926,563 - HP15_1829 0.82 -0.5 1,926,850 + -0.5 1,926,857 + -0.2 1,926,864 + +0.1 1,926,918 + -0.1 1,927,182 + HP15_1830 0.11 -0.1 1,927,215 - HP15_1830 0.12 -0.8 1,927,242 + HP15_1830 0.13 +0.7 1,927,333 + HP15_1830 0.15 +0.2 1,927,341 - HP15_1830 0.16 +0.4 1,927,483 + HP15_1830 0.20 +0.5 1,928,028 + HP15_1830 0.37 +0.9 1,928,121 + HP15_1830 0.40 -0.3 1,928,282 - HP15_1830 0.45 +0.0 1,928,288 - HP15_1830 0.45 -1.3 1,928,341 + HP15_1830 0.47 +0.3 1,928,561 - HP15_1830 0.53 -1.7 1,928,685 - HP15_1830 0.57 +0.5 1,928,700 + HP15_1830 0.58 +0.3 1,928,869 + HP15_1830 0.63 +0.2 1,929,072 + HP15_1830 0.69 +0.2 1,929,272 - HP15_1830 0.75 -0.0 1,929,346 + HP15_1830 0.77 +0.5 1,929,365 + HP15_1830 0.78 +0.2 1,929,510 - HP15_1830 0.82 +0.7 1,929,572 - HP15_1830 0.84 +0.9 1,929,645 + HP15_1830 0.87 -0.4 1,929,645 - HP15_1830 0.87 +0.6 1,929,645 - HP15_1830 0.87 -0.2 1,929,770 + +0.9 1,929,786 - +0.3 1,930,003 + +0.1 1,930,003 + -0.3 1,930,003 + +0.5 1,930,005 + -0.2 1,930,240 + -0.6
Or see this region's nucleotide sequence