Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_953 and HP15_954 are separated by 112 nucleotides HP15_954 and HP15_955 are separated by 177 nucleotides
HP15_953: HP15_953 - protein containing thiamine pyrophosphate enzyme, C-terminal TPP-binding / Thiamine pyrophosphate enzyme, N-terminal TPP binding region, at 969,711 to 971,369
_953
HP15_954: HP15_954 - peptidoglycan-associated cytoplasmic membrane protein, at 971,482 to 971,727
_954
HP15_955: HP15_955 - short chain fatty acid transporter, at 971,905 to 972,645
_955
Position (kb) 971
972 Strain fitness (log2 ratio) -1
0
1 at 970.496 kb on - strand, within HP15_953 at 970.679 kb on + strand, within HP15_953 at 970.687 kb on - strand, within HP15_953 at 970.709 kb on - strand, within HP15_953 at 970.749 kb on + strand, within HP15_953 at 970.884 kb on + strand, within HP15_953 at 970.887 kb on - strand, within HP15_953 at 970.892 kb on - strand, within HP15_953 at 970.897 kb on - strand, within HP15_953 at 970.897 kb on - strand, within HP15_953 at 970.901 kb on + strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.921 kb on - strand, within HP15_953 at 971.046 kb on + strand, within HP15_953 at 971.093 kb on - strand, within HP15_953 at 971.161 kb on - strand, within HP15_953 at 971.163 kb on - strand, within HP15_953 at 971.185 kb on + strand, within HP15_953 at 971.256 kb on + strand at 971.289 kb on + strand at 971.321 kb on - strand at 971.364 kb on - strand at 971.611 kb on - strand, within HP15_954 at 971.693 kb on - strand, within HP15_954 at 971.800 kb on + strand at 971.812 kb on + strand at 971.877 kb on - strand at 971.914 kb on + strand at 971.922 kb on - strand at 971.922 kb on - strand at 971.942 kb on + strand at 971.955 kb on + strand at 971.980 kb on - strand, within HP15_955 at 971.992 kb on - strand, within HP15_955 at 972.017 kb on + strand, within HP15_955 at 972.025 kb on - strand, within HP15_955 at 972.065 kb on + strand, within HP15_955 at 972.073 kb on - strand, within HP15_955 at 972.207 kb on - strand, within HP15_955 at 972.283 kb on - strand, within HP15_955 at 972.323 kb on + strand, within HP15_955 at 972.323 kb on + strand, within HP15_955 at 972.341 kb on + strand, within HP15_955 at 972.417 kb on + strand, within HP15_955 at 972.417 kb on + strand, within HP15_955 at 972.501 kb on + strand, within HP15_955 at 972.507 kb on - strand, within HP15_955 at 972.539 kb on - strand, within HP15_955 at 972.539 kb on - strand, within HP15_955 at 972.571 kb on + strand, within HP15_955 at 972.639 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 970,496 - HP15_953 0.47 -0.3 970,679 + HP15_953 0.58 +0.6 970,687 - HP15_953 0.59 -1.5 970,709 - HP15_953 0.60 -0.4 970,749 + HP15_953 0.63 -0.9 970,884 + HP15_953 0.71 -0.1 970,887 - HP15_953 0.71 +0.0 970,892 - HP15_953 0.71 +0.3 970,897 - HP15_953 0.71 -0.5 970,897 - HP15_953 0.71 -0.2 970,901 + HP15_953 0.72 +0.3 970,916 - HP15_953 0.73 -0.1 970,916 - HP15_953 0.73 -0.1 970,916 - HP15_953 0.73 -0.6 970,916 - HP15_953 0.73 +0.0 970,916 - HP15_953 0.73 -1.1 970,916 - HP15_953 0.73 -0.2 970,921 - HP15_953 0.73 -0.3 971,046 + HP15_953 0.80 +0.0 971,093 - HP15_953 0.83 +0.2 971,161 - HP15_953 0.87 -0.4 971,163 - HP15_953 0.88 -0.9 971,185 + HP15_953 0.89 +0.2 971,256 + -0.2 971,289 + +0.9 971,321 - -0.1 971,364 - +1.0 971,611 - HP15_954 0.52 +1.2 971,693 - HP15_954 0.86 -0.0 971,800 + -1.0 971,812 + +0.3 971,877 - +0.3 971,914 + -0.7 971,922 - -0.5 971,922 - -0.3 971,942 + +0.5 971,955 + +0.2 971,980 - HP15_955 0.10 +0.9 971,992 - HP15_955 0.12 -1.3 972,017 + HP15_955 0.15 +0.2 972,025 - HP15_955 0.16 -0.2 972,065 + HP15_955 0.22 -0.7 972,073 - HP15_955 0.23 -0.0 972,207 - HP15_955 0.41 -0.7 972,283 - HP15_955 0.51 +0.7 972,323 + HP15_955 0.56 +0.0 972,323 + HP15_955 0.56 -0.7 972,341 + HP15_955 0.59 +0.6 972,417 + HP15_955 0.69 +0.5 972,417 + HP15_955 0.69 +0.3 972,501 + HP15_955 0.80 -0.5 972,507 - HP15_955 0.81 +0.1 972,539 - HP15_955 0.86 +0.5 972,539 - HP15_955 0.86 -0.3 972,571 + HP15_955 0.90 -1.7 972,639 - -0.3
Or see this region's nucleotide sequence