Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_914 and HP15_915 are separated by 12 nucleotides HP15_915 and HP15_916 are separated by 32 nucleotides HP15_916 and HP15_917 are separated by 38 nucleotides
HP15_914: HP15_914 - peptidoglycan-binding LysM, at 926,525 to 928,642
_914
HP15_915: HP15_915 - secreted protein containing sulphatase-modifying factor domain, at 928,655 to 929,614
_915
HP15_916: HP15_916 - membrane protein, at 929,647 to 930,522
_916
HP15_917: HP15_917 - hypothetical protein, at 930,561 to 930,668
_917
Position (kb) 928
929
930 Strain fitness (log2 ratio) -2
-1
0
1
2 at 927.690 kb on + strand, within HP15_914 at 927.691 kb on - strand, within HP15_914 at 927.703 kb on + strand, within HP15_914 at 927.718 kb on + strand, within HP15_914 at 927.737 kb on - strand, within HP15_914 at 927.824 kb on - strand, within HP15_914 at 927.931 kb on + strand, within HP15_914 at 927.931 kb on + strand, within HP15_914 at 927.956 kb on - strand, within HP15_914 at 928.059 kb on + strand, within HP15_914 at 928.188 kb on - strand, within HP15_914 at 928.306 kb on + strand, within HP15_914 at 928.666 kb on + strand at 928.839 kb on - strand, within HP15_915 at 929.142 kb on - strand, within HP15_915 at 929.184 kb on - strand, within HP15_915 at 929.235 kb on + strand, within HP15_915 at 929.348 kb on - strand, within HP15_915 at 929.446 kb on - strand, within HP15_915 at 929.649 kb on - strand at 929.869 kb on - strand, within HP15_916 at 930.118 kb on - strand, within HP15_916 at 930.163 kb on + strand, within HP15_916 at 930.163 kb on + strand, within HP15_916 at 930.183 kb on + strand, within HP15_916 at 930.276 kb on + strand, within HP15_916 at 930.351 kb on - strand, within HP15_916 at 930.450 kb on + strand at 930.471 kb on - strand at 930.574 kb on - strand, within HP15_917 at 930.599 kb on - strand, within HP15_917 at 930.614 kb on - strand, within HP15_917
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 927,690 + HP15_914 0.55 -0.0 927,691 - HP15_914 0.55 -0.0 927,703 + HP15_914 0.56 -0.7 927,718 + HP15_914 0.56 -0.8 927,737 - HP15_914 0.57 +0.4 927,824 - HP15_914 0.61 +1.5 927,931 + HP15_914 0.66 -0.1 927,931 + HP15_914 0.66 +0.3 927,956 - HP15_914 0.68 -0.2 928,059 + HP15_914 0.72 -0.3 928,188 - HP15_914 0.79 -0.3 928,306 + HP15_914 0.84 -0.6 928,666 + +1.8 928,839 - HP15_915 0.19 -1.7 929,142 - HP15_915 0.51 +0.2 929,184 - HP15_915 0.55 +0.1 929,235 + HP15_915 0.60 +0.6 929,348 - HP15_915 0.72 +0.5 929,446 - HP15_915 0.82 +1.1 929,649 - -0.3 929,869 - HP15_916 0.25 -1.4 930,118 - HP15_916 0.54 -0.4 930,163 + HP15_916 0.59 -2.5 930,163 + HP15_916 0.59 +0.4 930,183 + HP15_916 0.61 -0.6 930,276 + HP15_916 0.72 -0.8 930,351 - HP15_916 0.80 -0.8 930,450 + -0.3 930,471 - -0.3 930,574 - HP15_917 0.12 -0.5 930,599 - HP15_917 0.35 -0.9 930,614 - HP15_917 0.49 -0.3
Or see this region's nucleotide sequence