Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_853 and HP15_854 are separated by 64 nucleotides HP15_854 and HP15_855 overlap by 1 nucleotides HP15_855 and HP15_856 are separated by 6 nucleotides HP15_856 and HP15_857 are separated by 138 nucleotides
HP15_853: HP15_853 - RIO1/ZK632.3/MJ0444 family protein, at 870,387 to 871,283
_853
HP15_854: HP15_854 - conserved hypothetical protein, secreted, at 871,348 to 872,208
_854
HP15_855: HP15_855 - M23 peptidase domain protein, at 872,208 to 873,176
_855
HP15_856: HP15_856 - UspA domain protein, at 873,183 to 873,602
_856
HP15_857: HP15_857 - sodium-dependent transporter family protein, at 873,741 to 875,123
_857
Position (kb) 872
873
874 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 871.302 kb on + strand at 871.313 kb on + strand at 871.320 kb on - strand at 871.345 kb on - strand at 871.394 kb on + strand at 871.394 kb on + strand at 871.428 kb on - strand at 871.509 kb on - strand, within HP15_854 at 871.511 kb on - strand, within HP15_854 at 871.511 kb on - strand, within HP15_854 at 871.511 kb on - strand, within HP15_854 at 871.557 kb on - strand, within HP15_854 at 871.557 kb on - strand, within HP15_854 at 871.562 kb on - strand, within HP15_854 at 871.566 kb on + strand, within HP15_854 at 871.567 kb on - strand, within HP15_854 at 871.574 kb on - strand, within HP15_854 at 871.757 kb on - strand, within HP15_854 at 871.798 kb on + strand, within HP15_854 at 871.798 kb on + strand, within HP15_854 at 871.848 kb on - strand, within HP15_854 at 871.931 kb on + strand, within HP15_854 at 872.043 kb on + strand, within HP15_854 at 872.048 kb on + strand, within HP15_854 at 872.165 kb on + strand at 872.165 kb on + strand at 872.272 kb on + strand at 872.520 kb on + strand, within HP15_855 at 872.671 kb on - strand, within HP15_855 at 872.684 kb on + strand, within HP15_855 at 872.684 kb on + strand, within HP15_855 at 872.856 kb on - strand, within HP15_855 at 873.014 kb on + strand, within HP15_855 at 873.031 kb on + strand, within HP15_855 at 873.052 kb on + strand, within HP15_855 at 873.151 kb on + strand at 873.304 kb on - strand, within HP15_856 at 873.363 kb on + strand, within HP15_856 at 873.436 kb on - strand, within HP15_856 at 873.443 kb on + strand, within HP15_856 at 873.443 kb on + strand, within HP15_856 at 873.489 kb on + strand, within HP15_856 at 873.505 kb on + strand, within HP15_856 at 873.524 kb on + strand, within HP15_856 at 873.570 kb on - strand at 873.599 kb on + strand at 873.812 kb on + strand at 874.077 kb on + strand, within HP15_857 at 874.085 kb on - strand, within HP15_857 at 874.085 kb on - strand, within HP15_857
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 871,302 + -0.0 871,313 + -0.5 871,320 - +0.1 871,345 - -2.2 871,394 + +0.8 871,394 + +0.5 871,428 - +0.0 871,509 - HP15_854 0.19 -2.5 871,511 - HP15_854 0.19 -1.3 871,511 - HP15_854 0.19 +0.9 871,511 - HP15_854 0.19 -0.3 871,557 - HP15_854 0.24 +0.2 871,557 - HP15_854 0.24 -0.1 871,562 - HP15_854 0.25 +0.1 871,566 + HP15_854 0.25 +0.3 871,567 - HP15_854 0.25 +0.0 871,574 - HP15_854 0.26 -0.3 871,757 - HP15_854 0.48 -0.2 871,798 + HP15_854 0.52 -0.2 871,798 + HP15_854 0.52 +0.3 871,848 - HP15_854 0.58 +0.2 871,931 + HP15_854 0.68 +1.5 872,043 + HP15_854 0.81 -0.9 872,048 + HP15_854 0.81 -0.9 872,165 + -0.7 872,165 + -0.0 872,272 + +0.1 872,520 + HP15_855 0.32 -0.2 872,671 - HP15_855 0.48 +0.3 872,684 + HP15_855 0.49 -0.2 872,684 + HP15_855 0.49 +0.8 872,856 - HP15_855 0.67 -0.0 873,014 + HP15_855 0.83 +0.5 873,031 + HP15_855 0.85 +0.5 873,052 + HP15_855 0.87 +0.0 873,151 + -1.3 873,304 - HP15_856 0.29 -1.5 873,363 + HP15_856 0.43 +1.3 873,436 - HP15_856 0.60 +0.5 873,443 + HP15_856 0.62 +0.3 873,443 + HP15_856 0.62 +4.5 873,489 + HP15_856 0.73 +1.5 873,505 + HP15_856 0.77 -0.2 873,524 + HP15_856 0.81 -0.9 873,570 - +0.5 873,599 + -0.0 873,812 + +0.1 874,077 + HP15_857 0.24 -0.3 874,085 - HP15_857 0.25 +0.7 874,085 - HP15_857 0.25 +1.2
Or see this region's nucleotide sequence