Strain Fitness in Marinobacter adhaerens HP15 around HP15_841

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_840 and HP15_841 are separated by 102 nucleotidesHP15_841 and HP15_842 are separated by 284 nucleotidesHP15_842 and HP15_843 are separated by 40 nucleotides HP15_840: HP15_840 - ABC transporter, transmembrane region: ABC transporter, at 858,883 to 860,685 _840 HP15_841: HP15_841 - YaiI/YqxD-like protein, at 860,788 to 861,240 _841 HP15_842: HP15_842 - phosphoglycerate mutase family protein, at 861,525 to 862,097 _842 HP15_843: HP15_843 - PhnA protein, at 862,138 to 862,476 _843 Position (kb) 860 861 862Strain fitness (log2 ratio) -2 -1 0 1 2at 859.850 kb on - strand, within HP15_840at 859.929 kb on + strand, within HP15_840at 859.977 kb on + strand, within HP15_840at 859.990 kb on + strand, within HP15_840at 860.043 kb on - strand, within HP15_840at 860.063 kb on + strand, within HP15_840at 860.081 kb on + strand, within HP15_840at 860.118 kb on + strand, within HP15_840at 860.236 kb on + strand, within HP15_840at 860.247 kb on + strand, within HP15_840at 860.520 kb on + strandat 860.689 kb on - strandat 860.853 kb on + strand, within HP15_841at 860.948 kb on + strand, within HP15_841at 861.019 kb on - strand, within HP15_841at 861.192 kb on - strand, within HP15_841at 861.192 kb on - strand, within HP15_841at 861.199 kb on + strandat 861.276 kb on - strandat 861.361 kb on - strandat 861.614 kb on - strand, within HP15_842at 861.636 kb on + strand, within HP15_842at 861.636 kb on + strand, within HP15_842at 861.654 kb on + strand, within HP15_842at 861.751 kb on - strand, within HP15_842at 861.778 kb on + strand, within HP15_842at 861.999 kb on - strand, within HP15_842at 861.999 kb on - strand, within HP15_842at 862.068 kb on + strandat 862.154 kb on - strandat 862.198 kb on + strand, within HP15_843at 862.203 kb on + strand, within HP15_843

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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859,850 - HP15_840 0.54 -0.4
859,929 + HP15_840 0.58 -0.2
859,977 + HP15_840 0.61 -0.3
859,990 + HP15_840 0.61 -0.8
860,043 - HP15_840 0.64 -1.2
860,063 + HP15_840 0.65 +1.8
860,081 + HP15_840 0.66 -1.6
860,118 + HP15_840 0.68 -0.0
860,236 + HP15_840 0.75 +0.4
860,247 + HP15_840 0.76 -2.5
860,520 + +0.1
860,689 - +0.2
860,853 + HP15_841 0.14 +0.3
860,948 + HP15_841 0.35 +1.0
861,019 - HP15_841 0.51 +1.1
861,192 - HP15_841 0.89 -0.3
861,192 - HP15_841 0.89 +0.2
861,199 + +1.1
861,276 - +0.8
861,361 - -0.9
861,614 - HP15_842 0.16 +0.1
861,636 + HP15_842 0.19 -0.5
861,636 + HP15_842 0.19 -0.2
861,654 + HP15_842 0.23 -1.5
861,751 - HP15_842 0.39 -0.4
861,778 + HP15_842 0.44 +0.3
861,999 - HP15_842 0.83 +0.7
861,999 - HP15_842 0.83 +2.0
862,068 + -0.2
862,154 - +0.5
862,198 + HP15_843 0.18 +0.2
862,203 + HP15_843 0.19 -1.0

Or see this region's nucleotide sequence