Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_829 and HP15_830 are separated by 353 nucleotides HP15_830 and HP15_831 are separated by 2 nucleotides HP15_831 and HP15_832 are separated by 192 nucleotides
HP15_829: HP15_829 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 846,644 to 848,146
_829
HP15_830: HP15_830 - conserved hypothetical protein, at 848,500 to 849,003
_830
HP15_831: HP15_831 - protein containing glutaredoxin domain, at 849,006 to 849,806
_831
HP15_832: HP15_832 - aldo/keto reductase-like diketogulonate reductase, at 849,999 to 850,934
_832
Position (kb) 848
849
850 Strain fitness (log2 ratio) -1
0
1
2 at 847.502 kb on - strand, within HP15_829 at 847.536 kb on + strand, within HP15_829 at 847.763 kb on - strand, within HP15_829 at 848.017 kb on + strand at 848.534 kb on - strand at 848.608 kb on + strand, within HP15_830 at 848.608 kb on + strand, within HP15_830 at 848.733 kb on + strand, within HP15_830 at 848.956 kb on - strand at 848.956 kb on - strand at 848.958 kb on + strand at 848.966 kb on - strand at 848.966 kb on - strand at 848.966 kb on - strand at 848.966 kb on - strand at 849.107 kb on - strand, within HP15_831 at 849.201 kb on + strand, within HP15_831 at 849.219 kb on - strand, within HP15_831 at 849.335 kb on - strand, within HP15_831 at 849.343 kb on + strand, within HP15_831 at 849.393 kb on + strand, within HP15_831 at 849.437 kb on - strand, within HP15_831 at 849.437 kb on - strand, within HP15_831 at 849.442 kb on - strand, within HP15_831 at 849.475 kb on + strand, within HP15_831 at 849.543 kb on + strand, within HP15_831 at 849.628 kb on - strand, within HP15_831 at 849.628 kb on - strand, within HP15_831 at 849.717 kb on - strand, within HP15_831 at 849.732 kb on - strand at 849.732 kb on - strand at 849.734 kb on + strand at 849.742 kb on - strand at 849.755 kb on + strand at 849.763 kb on - strand at 849.763 kb on - strand at 849.921 kb on + strand at 849.921 kb on - strand at 849.923 kb on + strand at 849.931 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 847,502 - HP15_829 0.57 -0.3 847,536 + HP15_829 0.59 +0.3 847,763 - HP15_829 0.74 +1.1 848,017 + +0.4 848,534 - +2.2 848,608 + HP15_830 0.21 +0.1 848,608 + HP15_830 0.21 +0.8 848,733 + HP15_830 0.46 +0.4 848,956 - -0.4 848,956 - +0.2 848,958 + +0.8 848,966 - -0.1 848,966 - +0.4 848,966 - -0.7 848,966 - +0.7 849,107 - HP15_831 0.13 -0.5 849,201 + HP15_831 0.24 +0.6 849,219 - HP15_831 0.27 -0.2 849,335 - HP15_831 0.41 -0.0 849,343 + HP15_831 0.42 +0.0 849,393 + HP15_831 0.48 +0.4 849,437 - HP15_831 0.54 -0.2 849,437 - HP15_831 0.54 -0.3 849,442 - HP15_831 0.54 +0.4 849,475 + HP15_831 0.59 +0.9 849,543 + HP15_831 0.67 +0.3 849,628 - HP15_831 0.78 -0.1 849,628 - HP15_831 0.78 +0.5 849,717 - HP15_831 0.89 +0.5 849,732 - +0.5 849,732 - +0.3 849,734 + -0.1 849,742 - -0.1 849,755 + -0.9 849,763 - +0.8 849,763 - -0.1 849,921 + +0.3 849,921 - -0.7 849,923 + +0.6 849,931 + +0.8
Or see this region's nucleotide sequence