Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_792 and HP15_793 are separated by 136 nucleotides HP15_793 and HP15_794 are separated by 32 nucleotides HP15_794 and HP15_795 are separated by 143 nucleotides
HP15_792: HP15_792 - nucleoside triphosphate pyrophosphohydrolase, at 806,654 to 807,511
_792
HP15_793: HP15_793 - conserved hypothetical protein, at 807,648 to 807,992
_793
HP15_794: HP15_794 - conserved hypothetical protein, at 808,025 to 808,258
_794
HP15_795: HP15_795 - phosphoenolpyruvate carboxylase, at 808,402 to 811,008
_795
Position (kb) 808
809 Strain fitness (log2 ratio) -1
0
1 at 807.042 kb on - strand, within HP15_792 at 807.042 kb on - strand, within HP15_792 at 807.176 kb on - strand, within HP15_792 at 807.226 kb on + strand, within HP15_792 at 807.234 kb on - strand, within HP15_792 at 807.337 kb on + strand, within HP15_792 at 807.350 kb on - strand, within HP15_792 at 807.475 kb on + strand at 807.510 kb on + strand at 807.822 kb on - strand, within HP15_793 at 808.079 kb on + strand, within HP15_794 at 808.087 kb on - strand, within HP15_794 at 808.087 kb on - strand, within HP15_794 at 808.103 kb on + strand, within HP15_794 at 808.186 kb on + strand, within HP15_794 at 808.279 kb on + strand at 808.365 kb on + strand at 808.449 kb on + strand at 808.664 kb on - strand, within HP15_795 at 808.768 kb on - strand, within HP15_795 at 808.843 kb on - strand, within HP15_795 at 808.942 kb on - strand, within HP15_795 at 809.170 kb on + strand, within HP15_795 at 809.225 kb on + strand, within HP15_795
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 807,042 - HP15_792 0.45 -1.0 807,042 - HP15_792 0.45 +0.5 807,176 - HP15_792 0.61 +0.1 807,226 + HP15_792 0.67 -0.1 807,234 - HP15_792 0.68 -0.5 807,337 + HP15_792 0.80 +0.3 807,350 - HP15_792 0.81 +0.6 807,475 + -0.1 807,510 + -0.7 807,822 - HP15_793 0.50 +0.3 808,079 + HP15_794 0.23 +0.3 808,087 - HP15_794 0.26 +1.5 808,087 - HP15_794 0.26 +0.0 808,103 + HP15_794 0.33 +0.6 808,186 + HP15_794 0.69 +0.4 808,279 + +1.2 808,365 + -0.4 808,449 + +0.8 808,664 - HP15_795 0.10 +0.1 808,768 - HP15_795 0.14 +0.5 808,843 - HP15_795 0.17 -0.2 808,942 - HP15_795 0.21 +0.2 809,170 + HP15_795 0.29 -0.5 809,225 + HP15_795 0.32 +0.2
Or see this region's nucleotide sequence