Strain Fitness in Marinobacter adhaerens HP15 around HP15_784

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_782 and HP15_783 are separated by 26 nucleotidesHP15_783 and HP15_784 overlap by 4 nucleotidesHP15_784 and HP15_785 overlap by 1 nucleotidesHP15_785 and HP15_786 are separated by 7 nucleotides HP15_782: HP15_782 - signal peptidase I, at 794,690 to 795,496 _782 HP15_783: HP15_783 - conserved hypothetical protein, at 795,523 to 795,912 _783 HP15_784: HP15_784 - ribonuclease 3, at 795,909 to 796,598 _784 HP15_785: HP15_785 - GTP-binding protein Era-like protein, at 796,598 to 797,515 _785 HP15_786: HP15_786 - DNA repair protein RecO, at 797,523 to 798,251 _786 Position (kb) 795 796 797Strain fitness (log2 ratio) -3 -2 -1 0 1at 795.680 kb on + strand, within HP15_783at 795.723 kb on + strand, within HP15_783at 795.723 kb on + strand, within HP15_783at 796.107 kb on + strand, within HP15_784at 797.520 kb on + strandat 797.528 kb on - strandat 797.538 kb on - strandat 797.548 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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795,680 + HP15_783 0.40 -0.4
795,723 + HP15_783 0.51 -1.0
795,723 + HP15_783 0.51 -0.2
796,107 + HP15_784 0.29 -3.0
797,520 + -0.6
797,528 - -0.4
797,538 - -0.6
797,548 - -0.4

Or see this region's nucleotide sequence