Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_770 and HP15_771 are separated by 110 nucleotides HP15_771 and HP15_772 are separated by 21 nucleotides HP15_772 and HP15_773 overlap by 17 nucleotides HP15_773 and HP15_774 are separated by 39 nucleotides
HP15_770: HP15_770 - signal transduction protein, at 781,148 to 781,981
_770
HP15_771: HP15_771 - glycine cleavage T-protein (aminomethyl transferase), at 782,092 to 783,087
_771
HP15_772: HP15_772 - conserved hypothetical protein, secreted, at 783,109 to 783,573
_772
HP15_773: HP15_773 - conserved hypothetical protein, at 783,557 to 783,829
_773
HP15_774: HP15_774 - L-aspartate oxidase, at 783,869 to 785,494
_774
Position (kb) 782
783
784 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 781.519 kb on - strand, within HP15_770 at 781.572 kb on + strand, within HP15_770 at 781.622 kb on + strand, within HP15_770 at 781.673 kb on + strand, within HP15_770 at 781.709 kb on + strand, within HP15_770 at 781.709 kb on + strand, within HP15_770 at 781.717 kb on - strand, within HP15_770 at 781.724 kb on - strand, within HP15_770 at 781.878 kb on + strand, within HP15_770 at 781.878 kb on + strand, within HP15_770 at 781.985 kb on + strand at 781.987 kb on + strand at 781.987 kb on + strand at 781.990 kb on - strand at 781.990 kb on - strand at 782.132 kb on + strand at 782.431 kb on + strand, within HP15_771 at 782.567 kb on - strand, within HP15_771 at 782.651 kb on + strand, within HP15_771 at 782.868 kb on - strand, within HP15_771 at 783.138 kb on + strand at 783.306 kb on + strand, within HP15_772 at 783.306 kb on + strand, within HP15_772 at 783.314 kb on - strand, within HP15_772 at 783.382 kb on + strand, within HP15_772 at 783.390 kb on - strand, within HP15_772 at 783.412 kb on - strand, within HP15_772 at 783.417 kb on - strand, within HP15_772 at 783.417 kb on - strand, within HP15_772 at 783.551 kb on - strand at 783.564 kb on + strand at 783.839 kb on - strand at 783.915 kb on - strand at 783.917 kb on - strand at 783.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 781,519 - HP15_770 0.44 -0.8 781,572 + HP15_770 0.51 +1.1 781,622 + HP15_770 0.57 -0.4 781,673 + HP15_770 0.63 -0.6 781,709 + HP15_770 0.67 -0.6 781,709 + HP15_770 0.67 -0.3 781,717 - HP15_770 0.68 -0.2 781,724 - HP15_770 0.69 -0.5 781,878 + HP15_770 0.88 -0.6 781,878 + HP15_770 0.88 -0.2 781,985 + -0.4 781,987 + +0.3 781,987 + -0.3 781,990 - -0.2 781,990 - +0.8 782,132 + -0.0 782,431 + HP15_771 0.34 -2.7 782,567 - HP15_771 0.48 -3.1 782,651 + HP15_771 0.56 -0.8 782,868 - HP15_771 0.78 -2.2 783,138 + -0.2 783,306 + HP15_772 0.42 +0.5 783,306 + HP15_772 0.42 -0.3 783,314 - HP15_772 0.44 +0.1 783,382 + HP15_772 0.59 -0.6 783,390 - HP15_772 0.60 +1.0 783,412 - HP15_772 0.65 +0.3 783,417 - HP15_772 0.66 +1.1 783,417 - HP15_772 0.66 +0.2 783,551 - +0.2 783,564 + +0.5 783,839 - +0.1 783,915 - -2.1 783,917 - -2.2 783,998 - -4.4
Or see this region's nucleotide sequence