Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_768 and HP15_769 are separated by 3 nucleotides HP15_769 and HP15_770 are separated by 158 nucleotides
HP15_768: HP15_768 - lysyl-tRNA synthetase, at 778,716 to 780,251
_768
HP15_769: HP15_769 - uracil-DNA glycosylase, at 780,255 to 780,989
_769
HP15_770: HP15_770 - signal transduction protein, at 781,148 to 781,981
_770
Position (kb) 780
781 Strain fitness (log2 ratio) -1
0
1 at 780.284 kb on + strand at 780.284 kb on + strand at 780.284 kb on + strand at 780.284 kb on + strand at 780.292 kb on - strand at 780.390 kb on + strand, within HP15_769 at 780.398 kb on - strand, within HP15_769 at 780.398 kb on - strand, within HP15_769 at 780.398 kb on - strand, within HP15_769 at 780.413 kb on - strand, within HP15_769 at 780.423 kb on - strand, within HP15_769 at 780.438 kb on + strand, within HP15_769 at 780.438 kb on + strand, within HP15_769 at 780.446 kb on - strand, within HP15_769 at 780.446 kb on - strand, within HP15_769 at 780.482 kb on - strand, within HP15_769 at 780.487 kb on + strand, within HP15_769 at 780.617 kb on + strand, within HP15_769 at 780.622 kb on + strand, within HP15_769 at 780.630 kb on - strand, within HP15_769 at 780.635 kb on - strand, within HP15_769 at 780.682 kb on + strand, within HP15_769 at 780.692 kb on + strand, within HP15_769 at 780.762 kb on - strand, within HP15_769 at 780.819 kb on + strand, within HP15_769 at 780.819 kb on - strand, within HP15_769 at 780.896 kb on + strand, within HP15_769 at 780.915 kb on - strand, within HP15_769 at 780.998 kb on - strand at 781.007 kb on + strand at 781.519 kb on - strand, within HP15_770 at 781.572 kb on + strand, within HP15_770 at 781.622 kb on + strand, within HP15_770 at 781.673 kb on + strand, within HP15_770 at 781.709 kb on + strand, within HP15_770 at 781.709 kb on + strand, within HP15_770 at 781.717 kb on - strand, within HP15_770 at 781.724 kb on - strand, within HP15_770 at 781.878 kb on + strand, within HP15_770 at 781.878 kb on + strand, within HP15_770 at 781.985 kb on + strand at 781.987 kb on + strand at 781.987 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 780,284 + +0.1 780,284 + +0.0 780,284 + +1.4 780,284 + -0.6 780,292 - -0.9 780,390 + HP15_769 0.18 -0.1 780,398 - HP15_769 0.19 +0.7 780,398 - HP15_769 0.19 +0.9 780,398 - HP15_769 0.19 -0.2 780,413 - HP15_769 0.21 -0.1 780,423 - HP15_769 0.23 -0.4 780,438 + HP15_769 0.25 -0.1 780,438 + HP15_769 0.25 -0.0 780,446 - HP15_769 0.26 +0.0 780,446 - HP15_769 0.26 +0.3 780,482 - HP15_769 0.31 -0.1 780,487 + HP15_769 0.32 +0.0 780,617 + HP15_769 0.49 -0.3 780,622 + HP15_769 0.50 +1.5 780,630 - HP15_769 0.51 -0.4 780,635 - HP15_769 0.52 -0.4 780,682 + HP15_769 0.58 +0.5 780,692 + HP15_769 0.59 +0.9 780,762 - HP15_769 0.69 +0.1 780,819 + HP15_769 0.77 -0.1 780,819 - HP15_769 0.77 -0.2 780,896 + HP15_769 0.87 +0.4 780,915 - HP15_769 0.90 +0.2 780,998 - +0.0 781,007 + -1.4 781,519 - HP15_770 0.44 -0.8 781,572 + HP15_770 0.51 +1.1 781,622 + HP15_770 0.57 -0.4 781,673 + HP15_770 0.63 -0.6 781,709 + HP15_770 0.67 -0.6 781,709 + HP15_770 0.67 -0.3 781,717 - HP15_770 0.68 -0.2 781,724 - HP15_770 0.69 -0.5 781,878 + HP15_770 0.88 -0.6 781,878 + HP15_770 0.88 -0.2 781,985 + -0.4 781,987 + +0.3 781,987 + -0.3
Or see this region's nucleotide sequence