Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_76 and HP15_77 are separated by 443 nucleotides HP15_77 and HP15_78 are separated by 68 nucleotides HP15_78 and HP15_79 are separated by 85 nucleotides
HP15_76: HP15_76 - phage integrase family protein-like protein, at 84,123 to 87,473
_76
HP15_77: HP15_77 - hypothetical protein, at 87,917 to 88,117
_77
HP15_78: HP15_78 - hypothetical protein, at 88,186 to 88,380
_78
HP15_79: HP15_79 - phage integrase family protein, at 88,466 to 89,674
_79
Position (kb) 88
89 Strain fitness (log2 ratio) -1
0
1
2
3 at 87.351 kb on + strand at 87.359 kb on + strand at 87.448 kb on - strand at 87.500 kb on - strand at 87.537 kb on - strand at 87.617 kb on + strand at 87.617 kb on + strand at 87.717 kb on - strand at 87.854 kb on - strand at 87.872 kb on + strand at 88.120 kb on + strand at 88.120 kb on + strand at 88.120 kb on + strand at 88.128 kb on - strand at 88.149 kb on + strand at 88.152 kb on - strand at 88.197 kb on + strand at 88.252 kb on - strand, within HP15_78 at 88.292 kb on - strand, within HP15_78 at 88.292 kb on - strand, within HP15_78 at 88.380 kb on + strand at 88.423 kb on - strand at 88.463 kb on + strand at 88.610 kb on + strand, within HP15_79 at 88.613 kb on - strand, within HP15_79 at 88.636 kb on + strand, within HP15_79 at 88.732 kb on - strand, within HP15_79 at 88.732 kb on - strand, within HP15_79 at 88.756 kb on - strand, within HP15_79 at 88.814 kb on + strand, within HP15_79 at 88.986 kb on + strand, within HP15_79 at 89.021 kb on - strand, within HP15_79 at 89.063 kb on - strand, within HP15_79 at 89.100 kb on + strand, within HP15_79 at 89.110 kb on + strand, within HP15_79
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 87,351 + +0.2 87,359 + -0.4 87,448 - -0.9 87,500 - +0.3 87,537 - +0.2 87,617 + -0.3 87,617 + -0.4 87,717 - -1.0 87,854 - +1.0 87,872 + -0.4 88,120 + +0.4 88,120 + +0.5 88,120 + +0.4 88,128 - -0.5 88,149 + +0.6 88,152 - +0.6 88,197 + +0.2 88,252 - HP15_78 0.34 -0.0 88,292 - HP15_78 0.54 +0.9 88,292 - HP15_78 0.54 +0.6 88,380 + -0.4 88,423 - +0.8 88,463 + -0.8 88,610 + HP15_79 0.12 -0.1 88,613 - HP15_79 0.12 -0.4 88,636 + HP15_79 0.14 -0.4 88,732 - HP15_79 0.22 -1.1 88,732 - HP15_79 0.22 +0.9 88,756 - HP15_79 0.24 -0.0 88,814 + HP15_79 0.29 -0.2 88,986 + HP15_79 0.43 -0.3 89,021 - HP15_79 0.46 +0.4 89,063 - HP15_79 0.49 +0.2 89,100 + HP15_79 0.52 +0.2 89,110 + HP15_79 0.53 +2.9
Or see this region's nucleotide sequence