Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_755 and HP15_756 are separated by 85 nucleotides HP15_756 and HP15_757 are separated by 164 nucleotides
HP15_755: HP15_755 - Mg2+ and Co2+ transporter CorB, at 765,144 to 766,430
_755
HP15_756: HP15_756 - cytochrome c assembly protein, at 766,516 to 767,340
_756
HP15_757: HP15_757 - signal recognition particle protein, at 767,505 to 768,896
_757
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 765.567 kb on + strand, within HP15_755 at 765.661 kb on - strand, within HP15_755 at 765.682 kb on + strand, within HP15_755 at 765.756 kb on + strand, within HP15_755 at 766.028 kb on - strand, within HP15_755 at 766.162 kb on + strand, within HP15_755 at 766.162 kb on + strand, within HP15_755 at 766.240 kb on - strand, within HP15_755 at 766.240 kb on - strand, within HP15_755 at 766.281 kb on + strand, within HP15_755 at 766.333 kb on + strand at 766.345 kb on - strand at 766.384 kb on + strand at 766.404 kb on - strand at 766.573 kb on + strand at 766.581 kb on - strand at 766.645 kb on + strand, within HP15_756 at 766.687 kb on - strand, within HP15_756 at 766.775 kb on + strand, within HP15_756 at 766.782 kb on - strand, within HP15_756 at 766.887 kb on - strand, within HP15_756 at 766.923 kb on - strand, within HP15_756 at 766.938 kb on + strand, within HP15_756 at 766.994 kb on - strand, within HP15_756 at 766.994 kb on - strand, within HP15_756 at 767.160 kb on - strand, within HP15_756 at 767.211 kb on + strand, within HP15_756 at 767.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 765,567 + HP15_755 0.33 +0.1 765,661 - HP15_755 0.40 +1.0 765,682 + HP15_755 0.42 -1.0 765,756 + HP15_755 0.48 +0.1 766,028 - HP15_755 0.69 +0.3 766,162 + HP15_755 0.79 -0.0 766,162 + HP15_755 0.79 -0.9 766,240 - HP15_755 0.85 +3.2 766,240 - HP15_755 0.85 -0.6 766,281 + HP15_755 0.88 +0.8 766,333 + +0.5 766,345 - -0.2 766,384 + -0.7 766,404 - -0.1 766,573 + -2.9 766,581 - -0.9 766,645 + HP15_756 0.16 -1.0 766,687 - HP15_756 0.21 -0.5 766,775 + HP15_756 0.31 -1.3 766,782 - HP15_756 0.32 -1.6 766,887 - HP15_756 0.45 +0.5 766,923 - HP15_756 0.49 -1.4 766,938 + HP15_756 0.51 -2.7 766,994 - HP15_756 0.58 -0.1 766,994 - HP15_756 0.58 -0.1 767,160 - HP15_756 0.78 -1.5 767,211 + HP15_756 0.84 -0.1 767,418 - -0.6
Or see this region's nucleotide sequence