Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_716 and HP15_717 are separated by 51 nucleotides HP15_717 and HP15_718 are separated by 40 nucleotides HP15_718 and HP15_719 overlap by 4 nucleotides HP15_719 and HP15_720 are separated by 3 nucleotides
HP15_716: HP15_716 - conserved hypothetical protein, at 725,509 to 726,318
_716
HP15_717: HP15_717 - MscS Mechanosensitive ion channel, at 726,370 to 727,230
_717
HP15_718: HP15_718 - ribosomal protein S6 modification protein-like protein, at 727,271 to 727,708
_718
HP15_719: HP15_719 - alpha-L-glutamate ligase, RimK family, at 727,705 to 728,610
_719
HP15_720: HP15_720 - succinylglutamate desuccinylase/aspartoacylase family protein, at 728,614 to 729,678
_720
Position (kb) 727
728 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 726.499 kb on - strand, within HP15_717 at 726.648 kb on - strand, within HP15_717 at 726.683 kb on - strand, within HP15_717 at 726.727 kb on - strand, within HP15_717 at 726.757 kb on - strand, within HP15_717 at 726.762 kb on - strand, within HP15_717 at 726.809 kb on + strand, within HP15_717 at 726.824 kb on + strand, within HP15_717 at 726.832 kb on - strand, within HP15_717 at 726.832 kb on - strand, within HP15_717 at 726.871 kb on - strand, within HP15_717 at 726.875 kb on - strand, within HP15_717 at 726.891 kb on + strand, within HP15_717 at 726.909 kb on + strand, within HP15_717 at 726.971 kb on - strand, within HP15_717 at 727.156 kb on - strand at 727.166 kb on - strand at 727.293 kb on + strand at 727.372 kb on - strand, within HP15_718 at 727.377 kb on + strand, within HP15_718 at 727.377 kb on + strand, within HP15_718 at 727.425 kb on - strand, within HP15_718 at 727.460 kb on - strand, within HP15_718 at 727.665 kb on + strand at 727.688 kb on + strand at 727.737 kb on + strand at 727.948 kb on - strand, within HP15_719 at 728.035 kb on + strand, within HP15_719 at 728.035 kb on + strand, within HP15_719 at 728.179 kb on + strand, within HP15_719 at 728.318 kb on - strand, within HP15_719 at 728.326 kb on + strand, within HP15_719 at 728.349 kb on - strand, within HP15_719 at 728.425 kb on + strand, within HP15_719 at 728.426 kb on + strand, within HP15_719 at 728.433 kb on - strand, within HP15_719 at 728.441 kb on + strand, within HP15_719 at 728.449 kb on - strand, within HP15_719 at 728.577 kb on + strand at 728.613 kb on - strand at 728.649 kb on + strand at 728.694 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 726,499 - HP15_717 0.15 +0.1 726,648 - HP15_717 0.32 +0.4 726,683 - HP15_717 0.36 +1.0 726,727 - HP15_717 0.41 +0.4 726,757 - HP15_717 0.45 -0.3 726,762 - HP15_717 0.46 +0.7 726,809 + HP15_717 0.51 -0.7 726,824 + HP15_717 0.53 -0.1 726,832 - HP15_717 0.54 -1.8 726,832 - HP15_717 0.54 +0.9 726,871 - HP15_717 0.58 -0.3 726,875 - HP15_717 0.59 +0.0 726,891 + HP15_717 0.61 -0.1 726,909 + HP15_717 0.63 +0.6 726,971 - HP15_717 0.70 +0.6 727,156 - +0.9 727,166 - +0.1 727,293 + -3.0 727,372 - HP15_718 0.23 -0.2 727,377 + HP15_718 0.24 -1.3 727,377 + HP15_718 0.24 -2.5 727,425 - HP15_718 0.35 -2.9 727,460 - HP15_718 0.43 -0.5 727,665 + -3.2 727,688 + -0.5 727,737 + +1.4 727,948 - HP15_719 0.27 -1.4 728,035 + HP15_719 0.36 +0.8 728,035 + HP15_719 0.36 -1.1 728,179 + HP15_719 0.52 +0.6 728,318 - HP15_719 0.68 +0.6 728,326 + HP15_719 0.69 +1.5 728,349 - HP15_719 0.71 +1.0 728,425 + HP15_719 0.79 -0.2 728,426 + HP15_719 0.80 -2.6 728,433 - HP15_719 0.80 -0.3 728,441 + HP15_719 0.81 -0.7 728,449 - HP15_719 0.82 +0.2 728,577 + +0.3 728,613 - -0.2 728,649 + -0.0 728,694 + +0.2
Or see this region's nucleotide sequence