Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_638 and HP15_639 are separated by 48 nucleotides HP15_639 and HP15_640 are separated by 8 nucleotides
HP15_638: HP15_638 - integral membrane protein, at 660,094 to 662,580
_638
HP15_639: HP15_639 - methyl-accepting chemotaxis sensory transducer, at 662,629 to 663,849
_639
HP15_640: HP15_640 - lipoic acid synthetase, at 663,858 to 664,910
_640
Position (kb) 662
663
664 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 661.785 kb on + strand, within HP15_638 at 661.835 kb on + strand, within HP15_638 at 661.861 kb on - strand, within HP15_638 at 661.863 kb on - strand, within HP15_638 at 661.890 kb on - strand, within HP15_638 at 661.968 kb on + strand, within HP15_638 at 662.082 kb on + strand, within HP15_638 at 662.090 kb on - strand, within HP15_638 at 662.159 kb on + strand, within HP15_638 at 662.231 kb on + strand, within HP15_638 at 662.231 kb on - strand, within HP15_638 at 662.286 kb on - strand, within HP15_638 at 662.562 kb on - strand at 662.644 kb on - strand at 662.736 kb on - strand at 662.764 kb on - strand, within HP15_639 at 662.785 kb on + strand, within HP15_639 at 662.785 kb on + strand, within HP15_639 at 662.990 kb on - strand, within HP15_639 at 663.108 kb on + strand, within HP15_639 at 663.126 kb on - strand, within HP15_639 at 663.234 kb on + strand, within HP15_639 at 663.295 kb on - strand, within HP15_639 at 663.296 kb on + strand, within HP15_639 at 663.487 kb on + strand, within HP15_639 at 663.487 kb on + strand, within HP15_639 at 663.488 kb on - strand, within HP15_639 at 663.495 kb on - strand, within HP15_639 at 663.555 kb on + strand, within HP15_639 at 663.563 kb on - strand, within HP15_639 at 663.644 kb on - strand, within HP15_639 at 663.679 kb on - strand, within HP15_639 at 663.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 661,785 + HP15_638 0.68 +0.9 661,835 + HP15_638 0.70 +0.3 661,861 - HP15_638 0.71 -0.5 661,863 - HP15_638 0.71 -0.3 661,890 - HP15_638 0.72 +0.5 661,968 + HP15_638 0.75 -0.0 662,082 + HP15_638 0.80 +0.1 662,090 - HP15_638 0.80 -0.4 662,159 + HP15_638 0.83 +0.4 662,231 + HP15_638 0.86 +0.6 662,231 - HP15_638 0.86 -1.1 662,286 - HP15_638 0.88 +0.6 662,562 - -0.4 662,644 - -0.1 662,736 - +0.0 662,764 - HP15_639 0.11 -0.0 662,785 + HP15_639 0.13 +0.1 662,785 + HP15_639 0.13 +0.2 662,990 - HP15_639 0.30 -0.0 663,108 + HP15_639 0.39 +0.4 663,126 - HP15_639 0.41 +1.7 663,234 + HP15_639 0.50 +0.8 663,295 - HP15_639 0.55 +1.0 663,296 + HP15_639 0.55 -0.2 663,487 + HP15_639 0.70 -0.6 663,487 + HP15_639 0.70 +1.7 663,488 - HP15_639 0.70 -0.3 663,495 - HP15_639 0.71 +0.2 663,555 + HP15_639 0.76 +1.0 663,563 - HP15_639 0.76 +0.4 663,644 - HP15_639 0.83 +0.5 663,679 - HP15_639 0.86 +0.4 663,899 - -3.2
Or see this region's nucleotide sequence