Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_635 and HP15_636 are separated by 160 nucleotides HP15_636 and HP15_637 are separated by 191 nucleotides
HP15_635: HP15_635 - 3-oxoacyl-(acyl carrier protein) synthase I, at 656,668 to 657,852
_635
HP15_636: HP15_636 - GTP-binding protein, ribosome biogenesis, YlqF, at 658,013 to 658,951
_636
HP15_637: HP15_637 - conserved hypothetical protein, secreted, at 659,143 to 659,658
_637
Position (kb) 658
659 Strain fitness (log2 ratio) -1
0
1
2 at 657.019 kb on - strand, within HP15_635 at 657.039 kb on + strand, within HP15_635 at 657.039 kb on + strand, within HP15_635 at 657.047 kb on - strand, within HP15_635 at 657.052 kb on - strand, within HP15_635 at 657.089 kb on - strand, within HP15_635 at 657.089 kb on - strand, within HP15_635 at 657.345 kb on - strand, within HP15_635 at 657.350 kb on + strand, within HP15_635 at 657.454 kb on + strand, within HP15_635 at 657.513 kb on - strand, within HP15_635 at 657.513 kb on - strand, within HP15_635 at 657.682 kb on - strand, within HP15_635 at 658.019 kb on - strand at 658.126 kb on + strand, within HP15_636 at 658.134 kb on - strand, within HP15_636 at 658.134 kb on - strand, within HP15_636 at 659.231 kb on + strand, within HP15_637 at 659.231 kb on + strand, within HP15_637 at 659.471 kb on - strand, within HP15_637 at 659.524 kb on + strand, within HP15_637 at 659.551 kb on - strand, within HP15_637 at 659.661 kb on - strand at 659.692 kb on - strand at 659.757 kb on - strand at 659.765 kb on - strand at 659.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 657,019 - HP15_635 0.30 +0.9 657,039 + HP15_635 0.31 -1.3 657,039 + HP15_635 0.31 +1.5 657,047 - HP15_635 0.32 +1.9 657,052 - HP15_635 0.32 +0.1 657,089 - HP15_635 0.36 -0.3 657,089 - HP15_635 0.36 +0.3 657,345 - HP15_635 0.57 -0.2 657,350 + HP15_635 0.58 -1.3 657,454 + HP15_635 0.66 +0.5 657,513 - HP15_635 0.71 -0.3 657,513 - HP15_635 0.71 -0.8 657,682 - HP15_635 0.86 +0.4 658,019 - -0.2 658,126 + HP15_636 0.12 +0.3 658,134 - HP15_636 0.13 +0.5 658,134 - HP15_636 0.13 +1.4 659,231 + HP15_637 0.17 +0.8 659,231 + HP15_637 0.17 -0.7 659,471 - HP15_637 0.64 -0.3 659,524 + HP15_637 0.74 -0.4 659,551 - HP15_637 0.79 +0.5 659,661 - +0.2 659,692 - +0.0 659,757 - +0.2 659,765 - +0.2 659,845 + +0.2
Or see this region's nucleotide sequence