Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_622 and HP15_623 are separated by 15 nucleotides HP15_623 and HP15_624 are separated by 122 nucleotides HP15_624 and HP15_625 overlap by 9 nucleotides HP15_625 and HP15_626 are separated by 25 nucleotides
HP15_622: HP15_622 - exoribonuclease R, at 646,163 to 648,604
_622
HP15_623: HP15_623 - RNA methyltransferase, TrmH family, group 3, at 648,620 to 649,357
_623
HP15_624: HP15_624 - hypothetical protein, at 649,480 to 649,635
_624
HP15_625: HP15_625 - ribosomal protein S6, at 649,627 to 650,019
_625
HP15_626: HP15_626 - ribosomal protein S18, at 650,045 to 650,275
_626
Position (kb) 648
649
650 Strain fitness (log2 ratio) -2
-1
0
1 at 647.624 kb on + strand, within HP15_622 at 647.624 kb on - strand, within HP15_622 at 647.624 kb on - strand, within HP15_622 at 647.626 kb on + strand, within HP15_622 at 647.632 kb on - strand, within HP15_622 at 647.680 kb on + strand, within HP15_622 at 647.697 kb on - strand, within HP15_622 at 647.752 kb on - strand, within HP15_622 at 648.022 kb on - strand, within HP15_622 at 648.336 kb on - strand, within HP15_622 at 648.382 kb on - strand at 648.694 kb on + strand, within HP15_623 at 648.727 kb on + strand, within HP15_623 at 648.958 kb on - strand, within HP15_623 at 649.014 kb on - strand, within HP15_623 at 649.291 kb on - strand at 649.301 kb on - strand at 649.358 kb on + strand at 650.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 647,624 + HP15_622 0.60 -0.7 647,624 - HP15_622 0.60 -0.5 647,624 - HP15_622 0.60 -0.3 647,626 + HP15_622 0.60 +0.1 647,632 - HP15_622 0.60 -0.6 647,680 + HP15_622 0.62 +0.2 647,697 - HP15_622 0.63 -0.6 647,752 - HP15_622 0.65 -0.6 648,022 - HP15_622 0.76 -1.9 648,336 - HP15_622 0.89 -0.2 648,382 - +0.7 648,694 + HP15_623 0.10 +0.2 648,727 + HP15_623 0.14 +1.2 648,958 - HP15_623 0.46 +0.8 649,014 - HP15_623 0.53 +0.2 649,291 - -0.4 649,301 - +0.7 649,358 + +1.0 650,345 - -1.9
Or see this region's nucleotide sequence