Strain Fitness in Marinobacter adhaerens HP15 around HP15_604

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_602 and HP15_603 are separated by 70 nucleotidesHP15_603 and HP15_604 are separated by 2 nucleotidesHP15_604 and HP15_605 are separated by 9 nucleotides HP15_602: HP15_602 - nicotinic acid mononucleotide adenyltransferase, at 623,374 to 624,024 _602 HP15_603: HP15_603 - Iojap-related protein, at 624,095 to 624,445 _603 HP15_604: HP15_604 - conserved hypothetical protein CHP00246, at 624,448 to 624,918 _604 HP15_605: HP15_605 - peptidoglycan glycosyltransferase, at 624,928 to 626,817 _605 Position (kb) 624 625Strain fitness (log2 ratio) -1 0 1at 623.991 kb on + strandat 623.991 kb on + strandat 624.267 kb on + strand, within HP15_603at 624.576 kb on + strand, within HP15_604at 624.599 kb on + strand, within HP15_604

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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623,991 + -0.7
623,991 + +0.4
624,267 + HP15_603 0.49 +0.1
624,576 + HP15_604 0.27 +0.3
624,599 + HP15_604 0.32 +1.2

Or see this region's nucleotide sequence