Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_593 and HP15_594 are separated by 122 nucleotides HP15_594 and HP15_595 are separated by 73 nucleotides HP15_595 and HP15_596 are separated by 203 nucleotides
HP15_593: HP15_593 - protein belonging to uncharacterized protein family UPF0118, at 612,861 to 613,976
_593
HP15_594: HP15_594 - peptidoglycan-binding domain 1 protein-like protein, at 614,099 to 614,518
_594
HP15_595: HP15_595 - dihydroxy-acid dehydratase, at 614,592 to 616,385
_595
HP15_596: HP15_596 - signal transduction protein, at 616,589 to 617,845
_596
Position (kb) 614
615
616
617 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 613.740 kb on + strand, within HP15_593 at 613.743 kb on - strand, within HP15_593 at 613.782 kb on - strand, within HP15_593 at 613.864 kb on - strand, within HP15_593 at 613.909 kb on + strand at 613.929 kb on + strand at 614.021 kb on - strand at 614.032 kb on + strand at 614.072 kb on + strand at 614.225 kb on + strand, within HP15_594 at 614.225 kb on + strand, within HP15_594 at 614.225 kb on + strand, within HP15_594 at 614.417 kb on + strand, within HP15_594 at 614.715 kb on + strand at 614.875 kb on - strand, within HP15_595 at 614.908 kb on + strand, within HP15_595 at 615.000 kb on + strand, within HP15_595 at 615.027 kb on - strand, within HP15_595 at 615.367 kb on + strand, within HP15_595 at 615.367 kb on + strand, within HP15_595 at 615.367 kb on + strand, within HP15_595 at 615.375 kb on - strand, within HP15_595 at 615.453 kb on + strand, within HP15_595 at 615.491 kb on - strand, within HP15_595 at 615.491 kb on - strand, within HP15_595 at 615.493 kb on + strand, within HP15_595 at 615.596 kb on + strand, within HP15_595 at 615.626 kb on - strand, within HP15_595 at 615.689 kb on + strand, within HP15_595 at 615.702 kb on - strand, within HP15_595 at 615.791 kb on + strand, within HP15_595 at 615.885 kb on + strand, within HP15_595 at 615.934 kb on + strand, within HP15_595 at 616.090 kb on + strand, within HP15_595 at 616.158 kb on - strand, within HP15_595 at 616.303 kb on - strand at 616.450 kb on + strand at 616.453 kb on - strand at 616.587 kb on - strand at 616.628 kb on - strand at 616.630 kb on + strand at 616.712 kb on - strand at 616.917 kb on + strand, within HP15_596 at 616.925 kb on - strand, within HP15_596 at 616.925 kb on - strand, within HP15_596 at 617.130 kb on + strand, within HP15_596 at 617.231 kb on + strand, within HP15_596 at 617.256 kb on + strand, within HP15_596 at 617.296 kb on + strand, within HP15_596 at 617.360 kb on - strand, within HP15_596 at 617.360 kb on - strand, within HP15_596
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 613,740 + HP15_593 0.79 +2.4 613,743 - HP15_593 0.79 +0.4 613,782 - HP15_593 0.83 -0.3 613,864 - HP15_593 0.90 -0.5 613,909 + -0.2 613,929 + +0.5 614,021 - +0.9 614,032 + -0.6 614,072 + +0.1 614,225 + HP15_594 0.30 +0.3 614,225 + HP15_594 0.30 +0.3 614,225 + HP15_594 0.30 +0.5 614,417 + HP15_594 0.76 +0.2 614,715 + -3.8 614,875 - HP15_595 0.16 -1.1 614,908 + HP15_595 0.18 -0.9 615,000 + HP15_595 0.23 -1.7 615,027 - HP15_595 0.24 +0.1 615,367 + HP15_595 0.43 -1.3 615,367 + HP15_595 0.43 -1.1 615,367 + HP15_595 0.43 -0.3 615,375 - HP15_595 0.44 -0.4 615,453 + HP15_595 0.48 -0.5 615,491 - HP15_595 0.50 -1.6 615,491 - HP15_595 0.50 -1.9 615,493 + HP15_595 0.50 -2.1 615,596 + HP15_595 0.56 -0.3 615,626 - HP15_595 0.58 -1.1 615,689 + HP15_595 0.61 -2.6 615,702 - HP15_595 0.62 -2.3 615,791 + HP15_595 0.67 +0.0 615,885 + HP15_595 0.72 -0.7 615,934 + HP15_595 0.75 -0.7 616,090 + HP15_595 0.84 -0.6 616,158 - HP15_595 0.87 -0.5 616,303 - -0.9 616,450 + -0.8 616,453 - +0.1 616,587 - +0.5 616,628 - +1.2 616,630 + +0.5 616,712 - -0.0 616,917 + HP15_596 0.26 -0.2 616,925 - HP15_596 0.27 +0.3 616,925 - HP15_596 0.27 +0.1 617,130 + HP15_596 0.43 -0.4 617,231 + HP15_596 0.51 -0.4 617,256 + HP15_596 0.53 -0.5 617,296 + HP15_596 0.56 +2.3 617,360 - HP15_596 0.61 +0.4 617,360 - HP15_596 0.61 +0.2
Or see this region's nucleotide sequence