Strain Fitness in Marinobacter adhaerens HP15 around HP15_573

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_571 and HP15_572 are separated by 11 nucleotidesHP15_572 and HP15_573 are separated by 90 nucleotidesHP15_573 and HP15_574 overlap by 4 nucleotides HP15_571: HP15_571 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, at 592,216 to 593,130 _571 HP15_572: HP15_572 - protein containing DUF721, at 593,142 to 593,588 _572 HP15_573: HP15_573 - hypothetical protein, at 593,679 to 593,807 _573 HP15_574: HP15_574 - peptidase M23B, at 593,804 to 594,757 _574 Position (kb) 593 594Strain fitness (log2 ratio) -2 -1 0 1at 593.140 kb on + strandat 593.658 kb on + strandat 593.722 kb on + strand, within HP15_573at 593.840 kb on + strandat 594.093 kb on + strand, within HP15_574at 594.104 kb on + strand, within HP15_574at 594.233 kb on + strand, within HP15_574at 594.405 kb on + strand, within HP15_574at 594.514 kb on - strand, within HP15_574at 594.606 kb on + strand, within HP15_574at 594.660 kb on + strand, within HP15_574

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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593,140 + +0.6
593,658 + +0.3
593,722 + HP15_573 0.33 +0.4
593,840 + +0.3
594,093 + HP15_574 0.30 +0.4
594,104 + HP15_574 0.31 -0.1
594,233 + HP15_574 0.45 +0.3
594,405 + HP15_574 0.63 -0.3
594,514 - HP15_574 0.74 -2.1
594,606 + HP15_574 0.84 -0.2
594,660 + HP15_574 0.90 +1.2

Or see this region's nucleotide sequence