Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_530 and HP15_531 are separated by 520 nucleotides HP15_531 and HP15_532 overlap by 28 nucleotides HP15_532 and HP15_533 are separated by 64 nucleotides
HP15_530: HP15_530 - conserved hypothetical protein, secreted, at 547,184 to 547,657
_530
HP15_531: HP15_531 - acetolactate synthase, large subunit, biosynthetic type, at 548,178 to 549,896
_531
HP15_532: HP15_532 - acetolactate synthase 3 regulatory subunit, at 549,869 to 550,390
_532
HP15_533: HP15_533 - ketol-acid reductoisomerase, at 550,455 to 551,471
_533
Position (kb) 548
549
550 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 547.240 kb on - strand, within HP15_530 at 547.372 kb on + strand, within HP15_530 at 547.540 kb on + strand, within HP15_530 at 547.624 kb on + strand at 547.704 kb on + strand at 547.704 kb on + strand at 547.829 kb on + strand at 547.853 kb on + strand at 548.030 kb on + strand at 548.130 kb on + strand at 548.138 kb on - strand at 548.202 kb on + strand at 548.288 kb on + strand at 548.292 kb on + strand at 548.326 kb on - strand at 548.563 kb on + strand, within HP15_531 at 548.577 kb on - strand, within HP15_531 at 548.618 kb on - strand, within HP15_531 at 548.829 kb on + strand, within HP15_531 at 548.837 kb on - strand, within HP15_531 at 548.890 kb on + strand, within HP15_531 at 548.900 kb on + strand, within HP15_531 at 549.000 kb on - strand, within HP15_531 at 549.016 kb on - strand, within HP15_531 at 549.158 kb on + strand, within HP15_531 at 549.181 kb on - strand, within HP15_531 at 549.472 kb on + strand, within HP15_531 at 549.509 kb on - strand, within HP15_531 at 549.611 kb on + strand, within HP15_531 at 549.662 kb on + strand, within HP15_531 at 549.827 kb on + strand at 549.881 kb on + strand at 550.256 kb on - strand, within HP15_532 at 550.256 kb on - strand, within HP15_532 at 550.267 kb on + strand, within HP15_532 at 550.296 kb on + strand, within HP15_532 at 550.296 kb on + strand, within HP15_532 at 550.296 kb on + strand, within HP15_532 at 550.383 kb on + strand at 550.393 kb on + strand at 550.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 547,240 - HP15_530 0.12 +0.3 547,372 + HP15_530 0.40 -0.0 547,540 + HP15_530 0.75 -0.5 547,624 + -0.5 547,704 + -0.2 547,704 + +0.5 547,829 + +0.3 547,853 + -0.4 548,030 + -2.1 548,130 + -1.0 548,138 - -3.9 548,202 + -4.2 548,288 + -7.1 548,292 + +0.1 548,326 - -1.1 548,563 + HP15_531 0.22 -2.6 548,577 - HP15_531 0.23 -1.3 548,618 - HP15_531 0.26 -1.5 548,829 + HP15_531 0.38 -7.1 548,837 - HP15_531 0.38 -0.9 548,890 + HP15_531 0.41 -6.0 548,900 + HP15_531 0.42 -1.4 549,000 - HP15_531 0.48 +0.7 549,016 - HP15_531 0.49 -1.5 549,158 + HP15_531 0.57 -3.2 549,181 - HP15_531 0.58 -3.8 549,472 + HP15_531 0.75 -5.1 549,509 - HP15_531 0.77 -3.8 549,611 + HP15_531 0.83 -5.0 549,662 + HP15_531 0.86 -2.1 549,827 + -3.1 549,881 + -0.6 550,256 - HP15_532 0.74 -1.7 550,256 - HP15_532 0.74 +0.7 550,267 + HP15_532 0.76 -3.9 550,296 + HP15_532 0.82 -3.6 550,296 + HP15_532 0.82 -3.5 550,296 + HP15_532 0.82 -4.9 550,383 + +0.4 550,393 + -0.4 550,404 + -1.0
Or see this region's nucleotide sequence