Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_470 and HP15_471 are separated by 263 nucleotides HP15_471 and HP15_472 are separated by 251 nucleotides HP15_472 and HP15_473 are separated by 67 nucleotides
HP15_470: HP15_470 - primosome assembly protein PriA, at 478,384 to 480,558
_470
HP15_471: HP15_471 - ribosomal protein L31, at 480,822 to 481,043
_471
HP15_472: HP15_472 - malate dehydrogenase (oxaloacetate-decarboxylating), NADP(+), at 481,295 to 482,559
_472
HP15_473: HP15_473 - penicillin-binding protein, 1A family, at 482,627 to 485,116
_473
Position (kb) 481
482
483 Strain fitness (log2 ratio) -2
-1
0
1 at 480.558 kb on - strand at 480.558 kb on - strand at 480.602 kb on - strand at 480.663 kb on - strand at 481.413 kb on + strand at 481.421 kb on - strand at 481.531 kb on + strand, within HP15_472 at 481.862 kb on - strand, within HP15_472 at 481.960 kb on + strand, within HP15_472 at 482.096 kb on + strand, within HP15_472 at 482.349 kb on + strand, within HP15_472 at 482.382 kb on + strand, within HP15_472 at 482.382 kb on + strand, within HP15_472 at 482.390 kb on - strand, within HP15_472 at 482.416 kb on + strand, within HP15_472 at 482.451 kb on + strand at 482.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 480,558 - +0.4 480,558 - +0.2 480,602 - -0.3 480,663 - +0.3 481,413 + -0.4 481,421 - -1.0 481,531 + HP15_472 0.19 -1.2 481,862 - HP15_472 0.45 -2.1 481,960 + HP15_472 0.53 -0.6 482,096 + HP15_472 0.63 -0.6 482,349 + HP15_472 0.83 -0.7 482,382 + HP15_472 0.86 -1.3 482,382 + HP15_472 0.86 -0.4 482,390 - HP15_472 0.87 -1.5 482,416 + HP15_472 0.89 -0.8 482,451 + -0.3 482,519 - -1.6
Or see this region's nucleotide sequence