Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_457 and HP15_458 are separated by 119 nucleotides HP15_458 and HP15_459 are separated by 46 nucleotides HP15_459 and HP15_460 are separated by 184 nucleotides
HP15_457: HP15_457 - 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase, at 461,617 to 463,896
_457
HP15_458: HP15_458 - transcriptional regulator, LysR family protein, at 464,016 to 464,906
_458
HP15_459: HP15_459 - glycine cleavage H-protein, subgroup, at 464,953 to 465,345
_459
HP15_460: HP15_460 - SAM-dependent methyltransferase, at 465,530 to 466,735
_460
Position (kb) 464
465 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 463.202 kb on + strand, within HP15_457 at 463.202 kb on + strand, within HP15_457 at 463.210 kb on - strand, within HP15_457 at 463.210 kb on - strand, within HP15_457 at 463.232 kb on - strand, within HP15_457 at 463.258 kb on + strand, within HP15_457 at 463.331 kb on - strand, within HP15_457 at 463.341 kb on + strand, within HP15_457 at 463.439 kb on - strand, within HP15_457 at 463.603 kb on + strand, within HP15_457 at 463.611 kb on - strand, within HP15_457 at 464.109 kb on + strand, within HP15_458 at 464.109 kb on + strand, within HP15_458 at 464.117 kb on - strand, within HP15_458 at 464.117 kb on - strand, within HP15_458 at 464.172 kb on + strand, within HP15_458 at 464.312 kb on + strand, within HP15_458 at 464.363 kb on + strand, within HP15_458 at 464.426 kb on + strand, within HP15_458 at 464.521 kb on - strand, within HP15_458 at 464.541 kb on - strand, within HP15_458 at 464.552 kb on + strand, within HP15_458 at 464.552 kb on + strand, within HP15_458 at 464.552 kb on + strand, within HP15_458 at 464.662 kb on - strand, within HP15_458 at 464.677 kb on - strand, within HP15_458 at 464.677 kb on - strand, within HP15_458 at 464.758 kb on - strand, within HP15_458 at 464.764 kb on - strand, within HP15_458 at 464.800 kb on - strand, within HP15_458 at 464.845 kb on + strand at 464.900 kb on + strand at 464.921 kb on - strand at 465.233 kb on - strand, within HP15_459 at 465.233 kb on - strand, within HP15_459 at 465.436 kb on - strand at 465.612 kb on + strand at 465.703 kb on - strand, within HP15_460 at 465.703 kb on - strand, within HP15_460 at 465.715 kb on - strand, within HP15_460 at 465.743 kb on - strand, within HP15_460 at 465.758 kb on - strand, within HP15_460 at 465.758 kb on - strand, within HP15_460
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 463,202 + HP15_457 0.70 -3.9 463,202 + HP15_457 0.70 -2.5 463,210 - HP15_457 0.70 -3.9 463,210 - HP15_457 0.70 -4.0 463,232 - HP15_457 0.71 -4.2 463,258 + HP15_457 0.72 -2.1 463,331 - HP15_457 0.75 -1.3 463,341 + HP15_457 0.76 -3.0 463,439 - HP15_457 0.80 -6.2 463,603 + HP15_457 0.87 -4.6 463,611 - HP15_457 0.87 -3.5 464,109 + HP15_458 0.10 -3.5 464,109 + HP15_458 0.10 -2.5 464,117 - HP15_458 0.11 -8.3 464,117 - HP15_458 0.11 -6.8 464,172 + HP15_458 0.18 -4.4 464,312 + HP15_458 0.33 -6.6 464,363 + HP15_458 0.39 -6.3 464,426 + HP15_458 0.46 -6.2 464,521 - HP15_458 0.57 -2.7 464,541 - HP15_458 0.59 -2.2 464,552 + HP15_458 0.60 -3.0 464,552 + HP15_458 0.60 -6.0 464,552 + HP15_458 0.60 -3.9 464,662 - HP15_458 0.73 -4.0 464,677 - HP15_458 0.74 -3.3 464,677 - HP15_458 0.74 -4.5 464,758 - HP15_458 0.83 -2.6 464,764 - HP15_458 0.84 -2.6 464,800 - HP15_458 0.88 -4.0 464,845 + -4.8 464,900 + -4.3 464,921 - +1.4 465,233 - HP15_459 0.71 +0.4 465,233 - HP15_459 0.71 -0.7 465,436 - +1.6 465,612 + +1.4 465,703 - HP15_460 0.14 -0.6 465,703 - HP15_460 0.14 +0.2 465,715 - HP15_460 0.15 -0.0 465,743 - HP15_460 0.18 +0.0 465,758 - HP15_460 0.19 +0.6 465,758 - HP15_460 0.19 +0.0
Or see this region's nucleotide sequence